PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010767001
Common NameGSBRNA2T00010767001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26535 Da    PI: 7.5023
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010767001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1878130456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + ++t+ ql  Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  GSBRNA2T00010767001  78 KKRLTSGQLASLERSFQEDIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 130
                          45699***********************************************9 PP
2HD-ZIP_I/II1149.1e-3777167292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kk+rl++ q+++LE+sF+e+ kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++y+ +++e+++L++ev++Lr+ l
  GSBRNA2T00010767001  77 KKKRLTSGQLASLERSFQEDIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYEVVSREKQMLHEEVKKLRALL 166
                          9**************************************************************************************877 PP

          HD-ZIP_I/II  92 k 92 
                          +
  GSBRNA2T00010767001 167 R 167
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1867134IPR009057Homeodomain-like
PROSITE profilePS5007116.68272132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-1972136IPR009057Homeodomain-like
SMARTSM003895.5E-1774136IPR001356Homeobox domain
CDDcd000866.13E-1577133No hitNo description
PfamPF000463.8E-1678130IPR001356Homeobox domain
PRINTSPR000315.6E-5103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000315.6E-5112128IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEWTTTRNLE NVRVAFMPPP WPESSSFNSL HSSNYDPYSG NSCTPTDAQI GPVISVPESE  60
KIINAYQFPS NDNEMIKKKR LTSGQLASLE RSFQEDIKLD SDRKLKLSRE LGLQPRQIAV  120
WFQNRRARWK AKQLEQLYDS LRQEYEVVSR EKQMLHEEVK KLRALLRDQG LIKKQISGGE  180
DMTEIPSVVI AHPRAENLNN NQINGENQIY GIDQYNNPML IASSCWPPFP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010767001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3520211e-114EU352021.1 Arabidopsis thaliana ecotype PHW-1 At5g03790 gene, partial cds.
GenBankEU3520241e-114EU352024.1 Arabidopsis thaliana ecotype Bla-10 At5g03790 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610664.11e-171PREDICTED: putative homeobox-leucine zipper protein ATHB-51
RefseqXP_013610665.11e-171PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-143ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A078JZE91e-170A0A078JZE9_BRANA; BnaCnng71060D protein
STRINGBo9g181720.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-128homeobox 51
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]