PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00010467001

Common Name

GSBRNA2T00010467001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 267aa MW: 29412.2 Da PI: 4.3287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00010467001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k++s++ +L H+++H GSBRNA2T00010467001 70 FICRFCNKRCSSSQSLGGHMNSH 92 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.58E-5	64	102	No hit	No description
PROSITE profile	PS50157	8.829	70	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MENQVMSSAS SSLAQLEKCN DINVAVEESK ETATENNNPG LGSDSQEVVS ERRSENPSLG 60 SGAVPTGNGF ICRFCNKRCS SSQSLGGHMN SHKRELQWER KQKENEQQFH RQWILSQYSQ 120 GGLSNDNNLG NTSEPFKRIC TGLYPSFNSG LMDMNMTVVP RMAPTGFFSG NTFTNGSFSG 180 GLEPMPSYNN YPPMLPRNVP PFPPHRTTNL PSYWYPQENV LNEEDVILKL GNDNIVEIDD 240 DDDADADAVD QPEEGTSKSW GADLSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00010467001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022569029.1	0.0	uncharacterized protein LOC111211951
Refseq	XP_022569934.1	0.0	uncharacterized protein LOC111212639
TrEMBL	A0A078IU16	0.0	A0A078IU16_BRANA; BnaCnng24940D protein
STRING	Bo9g010570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	1e-67	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]