PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00009958001 | ||||||||
Common Name | GSBRNA2T00009958001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22553.8 Da PI: 8.7128 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.5e-19 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+tae Aa+a+++a++ ++g GSBRNA2T00009958001 19 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEAAARAYDKAARDFRG 68 59*******.**********8...557**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-22 | 19 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.6E-13 | 19 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-36 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 19 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-21 | 19 | 77 | No hit | No description |
PROSITE profile | PS51032 | 24.131 | 19 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKLGLKHDP VHSNAIEIRY RGVRKRPWGR YAAEIRDPGK KTRVWLGTFD TAEAAARAYD 60 KAARDFRGAK AKTNFPNFLE LCENVSIGGG RGFERSPSQT STLYCASPPA AADIVPPPLE 120 LSLGGRGGAC YQIPVARPMY YLDLMGGHAV QPPMSLACRS PVMHVATKVA CGGQSDSDSS 180 SVVDFDGGIE KRAQLLDLDL NLPPPLEQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 19 | 85 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4112 | 0.0 | flower| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00009958001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008106 | 6e-59 | AB008106.1 Arabidopsis thaliana AtERF-4 mRNA for ethylene responsive element binding factor 4, complete cds. | |||
GenBank | AF003098 | 6e-59 | AF003098.1 Arabidopsis thaliana AP2 domain containing protein RAP2.5 mRNA, complete cds. | |||
GenBank | AP000413 | 6e-59 | AP000413.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4. | |||
GenBank | AY086232 | 6e-59 | AY086232.1 Arabidopsis thaliana clone 22775 mRNA, complete sequence. | |||
GenBank | AY140030 | 6e-59 | AY140030.1 Arabidopsis thaliana ethylene responsive element binding factor 4 (AtERF4) (At3g15210) mRNA, complete cds. | |||
GenBank | BT010325 | 6e-59 | BT010325.1 Arabidopsis thaliana At3g15210 mRNA, complete cds. | |||
GenBank | CP002686 | 6e-59 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013644831.1 | 1e-153 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | O80340 | 4e-83 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A078G0N0 | 1e-153 | A0A078G0N0_BRANA; BnaA01g28970D protein | ||||
STRING | Bra021594.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 5e-65 | ethylene responsive element binding factor 4 |