PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009958001
Common NameGSBRNA2T00009958001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 210aa    MW: 22553.8 Da    PI: 8.7128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009958001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-191968255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+tae Aa+a+++a++ ++g
  GSBRNA2T00009958001 19 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEAAARAYDKAARDFRG 68
                         59*******.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-221976IPR016177DNA-binding domain
PfamPF008478.6E-131968IPR001471AP2/ERF domain
SMARTSM003808.3E-361982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-321977IPR001471AP2/ERF domain
CDDcd000181.51E-211977No hitNo description
PROSITE profilePS5103224.1311976IPR001471AP2/ERF domain
PRINTSPR003672.9E-112031IPR001471AP2/ERF domain
PRINTSPR003672.9E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVKLGLKHDP VHSNAIEIRY RGVRKRPWGR YAAEIRDPGK KTRVWLGTFD TAEAAARAYD  60
KAARDFRGAK AKTNFPNFLE LCENVSIGGG RGFERSPSQT STLYCASPPA AADIVPPPLE  120
LSLGGRGGAC YQIPVARPMY YLDLMGGHAV QPPMSLACRS PVMHVATKVA CGGQSDSDSS  180
SVVDFDGGIE KRAQLLDLDL NLPPPLEQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2019851481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.41120.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009958001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081066e-59AB008106.1 Arabidopsis thaliana AtERF-4 mRNA for ethylene responsive element binding factor 4, complete cds.
GenBankAF0030986e-59AF003098.1 Arabidopsis thaliana AP2 domain containing protein RAP2.5 mRNA, complete cds.
GenBankAP0004136e-59AP000413.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4.
GenBankAY0862326e-59AY086232.1 Arabidopsis thaliana clone 22775 mRNA, complete sequence.
GenBankAY1400306e-59AY140030.1 Arabidopsis thaliana ethylene responsive element binding factor 4 (AtERF4) (At3g15210) mRNA, complete cds.
GenBankBT0103256e-59BT010325.1 Arabidopsis thaliana At3g15210 mRNA, complete cds.
GenBankCP0026866e-59CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644831.11e-153ethylene-responsive transcription factor 4-like
SwissprotO803404e-83ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A078G0N01e-153A0A078G0N0_BRANA; BnaA01g28970D protein
STRINGBra021594.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-65ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cao WH, et al.
    Modulation of ethylene responses affects plant salt-stress responses.
    Plant Physiol., 2007. 143(2): p. 707-19
    [PMID:17189334]
  3. Lyons R, et al.
    The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation.
    Sci Rep, 2013. 3: p. 2866
    [PMID:24104185]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  6. Gao S, et al.
    A cotton miRNA is involved in regulation of plant response to salt stress.
    Sci Rep, 2016. 6: p. 19736
    [PMID:26813144]
  7. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]
  8. Liu W, et al.
    The ethylene response factor AtERF4 negatively regulates the iron deficiency response in Arabidopsis thaliana.
    PLoS ONE, 2017. 12(10): p. e0186580
    [PMID:29045490]