PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00009571001

Common Name

GSBRNA2T00009571001, LOC106365906

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 255aa MW: 28647.5 Da PI: 6.7165

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00009571001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C +sF ++ L H++ H GSBRNA2T00009571001 78 FSCNYCQRSFYSSQALGGHQNAH 100 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.91E-7	73	105	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-4	76	104	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.718	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MNISREKQLP SDPSCMASST AFPCQDSLNQ RQEQSFKDEE ADVNDSTQEL NLLDCIDTSI 60 DVNQSYNGSI TPTEHKLFSC NYCQRSFYSS QALGGHQNAH KRERTLAKRA QRMGASASAF 120 GHPYGFSPVS FHGQYNNRSL EIQAHSMSHN ISSYNGFGDH YGHINWSRLP LDQQPAIGKL 180 SSVDHFHNHH QHHHQMMMMM DPSVTTRSNN MARSSSNIGR NLVGSLTLEQ WQGDEGLFST 240 IQEEKQNLDL SLKL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the chalaze of seeds, hypocotyls, cotyledons, roots, emerging lateral roots, leaves, sepals and stamens. These data suggest that ZFP3 is expressed in most organs, showing high expression in vascular tissues.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00009571001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111658.1	0.0	PREDICTED: zinc finger protein 3-like
Refseq	XP_013660873.1	0.0	zinc finger protein 3
Swissprot	Q39262	1e-105	ZFP3_ARATH; Zinc finger protein 3
TrEMBL	A0A078G511	0.0	A0A078G511_BRANA; BnaA09g04660D protein
TrEMBL	M4F626	0.0	M4F626_BRARP; Uncharacterized protein
STRING	Bra036535.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	1e-107	zinc finger protein 3

Link Out ? help Back to Top
Entrez Gene	106365906

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang A, et al. The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response. PLoS ONE, 2016. 11(12): p. e0168367 [PMID:27977750]