PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009570001
Common NameGSBRNA2T00009570001, LOC106365907
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 180aa    MW: 20584.2 Da    PI: 8.229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009570001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18756255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  GSBRNA2T00009570001  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMCG 56
                         69******9.**********8.....334**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.05E-33666No hitNo description
Gene3DG3DSA:3.30.730.101.0E-33764IPR001471AP2/ERF domain
SMARTSM003804.3E-39770IPR001471AP2/ERF domain
PROSITE profilePS5103220.613764IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20766IPR016177DNA-binding domain
PfamPF008476.2E-11756IPR001471AP2/ERF domain
PRINTSPR003679.2E-11819IPR001471AP2/ERF domain
PRINTSPR003679.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGNRAR  60
TNFPYNPNAI PSSSSKLLSA TLTAKLHKCY MASLQLTKRT QTQTQTQMQN ARYDGVMNVT  120
SDGNQYNRGG VTEIKWEDGD VDMQHNLRPL EEDDIEQMIE ELLHYGSIEL RSVLPTQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-17669468ATERF1
3gcc_A4e-17669468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009570001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111659.11e-134PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_013660874.11e-134ethylene-responsive transcription factor ERF003
SwissprotQ94AW53e-96ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A078G4921e-133A0A078G492_BRANA; BnaA09g04650D protein
TrEMBLA0A397XR791e-133A0A397XR79_BRACM; Uncharacterized protein
TrEMBLM4F6271e-133M4F627_BRARP; Uncharacterized protein
STRINGBra036536.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-74ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]