PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009544001
Common NameGSBRNA2T00009544001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 456aa    MW: 50427.3 Da    PI: 6.9606
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009544001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.7e-14123161241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          + k+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  GSBRNA2T00009544001 123 KPKHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNNLE 161
                          5699************************.********976 PP
2TCR53.35.5e-17208247140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a++ Cse+C+C+dCkN e
  GSBRNA2T00009544001 208 KHSKGCHCKKSGCLKKYCECFQANVLCSENCRCQDCKNFE 247
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-15122162IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.824123248IPR005172CRC domain
PfamPF036382.3E-11125159IPR005172CRC domain
SMARTSM011143.0E-19208249IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-13211246IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDNSDQDLGS PRNQLARRLD FSVSAAAAEM ESSQGSEKHS PLDSNSSRED HKEEDLLPPP  60
PPSGSEEQVL KPPVRSELTT PPQKPPPLNG FDHKSAKCRV SKQEPLTPRG HTEAASNEGT  120
PRKPKHCNCK NSKCLKLYCE CFASGSYCNG CNCLNCHNNL ENETARQEAI TGTLERNPDA  180
FKPKIAGSPL GTEDLQEDVR HQLLILGKHS KGCHCKKSGC LKKYCECFQA NVLCSENCRC  240
QDCKNFEGSV ERNTLLHGPE TYIQQQTVHI NPLESRKRKS KEASHSARGS SAVPHLIRNG  300
DTSLFSVPTT CTYRSSLSNT IQPRHVKDLC ALLVTKSLDV ANKRRKSEKD PSLDPALRDA  360
NETNDSPDCV LDSTRMDEKP LSPATRALMC DDEDVIISEK ETSAARVKTS QEKEEDADTS  420
SESFVEQERQ ILSSFRDFLI QFSNRGNIKG KLIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-3212125710132Protein lin-54 homolog
5fd3_B4e-3212125710132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009544001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111675.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY841e-175TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A078FZQ20.0A0A078FZQ2_BRANA; BnaA09g04480D protein
STRINGBra036551.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-160Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]