PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009503001
Common NameGSBRNA2T00009503001, LOC106365874
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 152aa    MW: 16906.7 Da    PI: 8.5902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88e-086081526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         lC++f  + +C++Gd+C++ H+
  GSBRNA2T00009503001 60 LCNRFVSSNFCPFGDSCRYLHP 81
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.12E-12444No hitNo description
PfamPF062206.7E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.9015583IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65782IPR000571Zinc finger, CCCH-type
SMARTSM003560.00625782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-66080IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-66081IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSNP HLRAKALWYS SITTSDVNNQ QVSSFTSRGL  60
CNRFVSSNFC PFGDSCRYLH PNNITGSTGY TNSNNNTQLL AGLPNQHIQG TSLNRDCFSG  120
RAGGTGWFHL PPSLRPPPEQ GYPQLPSIDW G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.156952e-95seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009503001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660838.11e-110zinc finger CCCH domain-containing protein 3
TrEMBLA0A078G4X21e-109A0A078G4X2_BRANA; BnaA09g04110D protein
STRINGXP_006394904.11e-78(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-72C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]