PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00009475001

Common Name

GSBRNA2T00009475001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 402aa MW: 42596.8 Da PI: 4.1564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00009475001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F+++ L H++ H GSBRNA2T00009475001 189 FSCPTCKKGFPSSQALGGHQNAH 211 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.93E-6	186	217	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.1E-4	187	216	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.572	189	216	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.6E-7	189	213	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	191	211	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MSSSSSSVFQ PKTCNEIIVA VEESMEKAAE SQVVSSASSS ATQPEKCNDV TVAVEESMEK 60 ATENQAVSSD GSSAAPQPEK TNDVTMAVEE AKEMAAENQV VSSAGSSAAP QPNDIIVAVE 120 GDKEVATENQ IVPYTGSPAP QAEQCTDIVI VATENNNPGT ENPSLMGSGA VPTGSQILQL 180 YPPRSNKIFS CPTCKKGFPS SQALGGHQNA HKQEREWEKK RKNMEQEYPG FAFLNPNIDN 240 PLMFFLGGYS EDALTHENHL GIPLDDAFKR RFARNHPSVN NGSSDMNITA VPRVAPTGFF 300 AGNTPTTNGS SSGGLGPPYN SYPPMLPRNF PPFPPPQTNN LPSGLYPQQE NVLNEVNFIS 360 EIGKGKNIIE IDDDDDDDAD AGADDGPIAG TSKSWGADLS L*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MSSSSSSVFQ PKTCNEIIVA VEESMEKAAE SQVVSSASSS ATQPEKCNDV TVAVEESMEK  60
ATENQAVSSD GSSAAPQPEK TNDVTMAVEE AKEMAAENQV VSSAGSSAAP QPNDIIVAVE  120
GDKEVATENQ IVPYTGSPAP QAEQCTDIVI VATENNNPGT ENPSLMGSGA VPTGSQILQL  180
YPPRSNKIFS CPTCKKGFPS SQALGGHQNA HKQEREWEKK RKNMEQEYPG FAFLNPNIDN  240
PLMFFLGGYS EDALTHENHL GIPLDDAFKR RFARNHPSVN NGSSDMNITA VPRVAPTGFF  300
AGNTPTTNGS SSGGLGPPYN SYPPMLPRNF PPFPPPQTNN LPSGLYPQQE NVLNEVNFIS  360
EIGKGKNIIE IDDDDDDDAD AGADDGPIAG TSKSWGADLS L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00009475001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111739.1	0.0	PREDICTED: uncharacterized protein LOC103837161
TrEMBL	A0A078G4V7	0.0	A0A078G4V7_BRANA; BnaA09g03910D protein
STRING	Bra036609.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	3e-62	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]