PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009348001
Common NameGSBRNA2T00009348001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 233aa    MW: 27368.2 Da    PI: 8.0396
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009348001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.11.1e-25120170252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl
  GSBRNA2T00009348001 120 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIYRWPHRKLKSL 170
                          6799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.2107192IPR003035RWP-RK domain
PfamPF020421.3E-21123170IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDPKFLQPLD SMKIENQYEP DSLFDMLERL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF  60
FENIEVNNTI SSDILMLTQE PYFSSDSSSP LVVQNNHCPS TNERREKKAP KKRNTRAKRQ  120
DKLELSEIRK YFDRPIMKAA KELNVGLTVL KKRCRELEIY RWPHRKLKSL NSLISNLKGV  180
GMDEEVKNLE EHRVLIEQEP DAELTDGTKK LRQACFKAKY KRKKSLANDG YY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009348001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119842.11e-169PREDICTED: protein RKD4
RefseqXP_013726811.11e-169protein RKD4
SwissprotQ9LVU81e-112RKD4_ARATH; Protein RKD4
TrEMBLA0A078G3S31e-170A0A078G3S3_BRANA; BnaC09g29080D protein
STRINGBra003088.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-104RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]