PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00009348001

Common Name

GSBRNA2T00009348001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 233aa MW: 27368.2 Da PI: 8.0396

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00009348001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.1	1.1e-25	120	170	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl GSBRNA2T00009348001 120 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIYRWPHRKLKSL 170 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	107	192	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-21	123	170	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDPKFLQPLD SMKIENQYEP DSLFDMLERL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF 60 FENIEVNNTI SSDILMLTQE PYFSSDSSSP LVVQNNHCPS TNERREKKAP KKRNTRAKRQ 120 DKLELSEIRK YFDRPIMKAA KELNVGLTVL KKRCRELEIY RWPHRKLKSL NSLISNLKGV 180 GMDEEVKNLE EHRVLIEQEP DAELTDGTKK LRQACFKAKY KRKKSLANDG YY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00009348001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119842.1	1e-169	PREDICTED: protein RKD4
Refseq	XP_013726811.1	1e-169	protein RKD4
Swissprot	Q9LVU8	1e-112	RKD4_ARATH; Protein RKD4
TrEMBL	A0A078G3S3	1e-170	A0A078G3S3_BRANA; BnaC09g29080D protein
STRING	Bra003088.1-P	1e-169	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-104	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]