PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008741001
Common NameGSBRNA2T00008741001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 136aa    MW: 14912.2 Da    PI: 6.54
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008741001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-191868255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr+++ +g+++AeIrd ++ g   r++lg+f tae+Aa+a+++a+ +++g
  GSBRNA2T00008741001 18 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFETAEDAARAYDRAAYSMRG 68
                         79*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.49E-171877No hitNo description
SMARTSM003801.4E-341882IPR001471AP2/ERF domain
PROSITE profilePS5103223.3931876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-311878IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-231878IPR016177DNA-binding domain
PfamPF008471.3E-131868IPR001471AP2/ERF domain
PRINTSPR003673.8E-111930IPR001471AP2/ERF domain
PRINTSPR003673.8E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDQGSRSGGG GGGAEQGKFR GVRRRPWGKY AAEIRDSRKH GERVWLGTFE TAEDAARAYD  60
RAAYSMRGQA AILNFPHEYN MGSGSLSNSA ATAATSSSSR QVFEFEYLDD SVLDELLEYG  120
ENYNKINNIN MGNRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-5311121114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008741001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324370.0AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604007.12e-94PREDICTED: ethylene-responsive transcription factor 14
SwissprotP938221e-58ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLA0A078IT595e-94A0A078IT59_BRANA; BnaAnng12120D protein
STRINGBo8g115580.19e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.17e-44Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]