PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008346001
Common NameGSBRNA2T00008346001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 335aa    MW: 37929 Da    PI: 6.2699
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008346001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.1e-061343434
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                         r+C+ +e+  +  +C+ ++  lC  C  + H
  GSBRNA2T00008346001 13 RICDYCESSVALVYCKADSAKLCLACDNQVH 43
                         79**************************999 PP
2zf-B_box231.7e-075698442
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                           C+ +++ + + fC + ++ lC++C  ++H +    H+++pl
  GSBRNA2T00008346001 56 LLCDSCDDSPSSVFCDTESSVLCQNCDWQHHTSssslHSRRPL 98
                         57***************************88668899988775 PP
3CCT58.42.5e-20290332143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k+
  GSBRNA2T00008346001 290 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKS 332
                          899**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7831057IPR000315B-box-type zinc finger
SMARTSM003363.0E-111057IPR000315B-box-type zinc finger
CDDcd000211.88E-61357No hitNo description
PROSITE profilePS5011910.3955398IPR000315B-box-type zinc finger
CDDcd000211.71E-45784No hitNo description
SMARTSM003360.315898IPR000315B-box-type zinc finger
PfamPF062032.2E-14290332IPR010402CCT domain
PROSITE profilePS5101714.406290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEKEEEEEGS HHRICDYCES SVALVYCKAD SAKLCLACDN QVHVTNQLFS KHFRSLLCDS  60
CDDSPSSVFC DTESSVLCQN CDWQHHTSSS SLHSRRPLEG FSGCPSVTEL LALVGLDDLS  120
DKALFLPHPR GGSEQTPPQI VSLNDLVASD GSSHNYRAMD VPPLPKNRHA TCGRHKEEMI  180
RQLRELSRSE PSCLKYETLD AELDTTGFLF LEPGNDDYLF SSTFESQVGG LKWFEDQQED  240
YYPYSDDNNV NQRGCSTQQQ QQQESSPVMV PVSTSTTTTR LTHEINSLER NSALSRYKAK  300
KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KSHP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.276430.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008346001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896340.0AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636130.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-147COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A078ITC70.0A0A078ITC7_BRANA; BnaC04g00040D protein
TrEMBLA0A0D3BNH90.0A0A0D3BNH9_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g002240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-108B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]