PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008339001
Common NameGSBRNA2T00008339001, LOC106395401
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 156aa    MW: 17617.8 Da    PI: 7.2525
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008339001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.81.8e-5445140297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPian++rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa+a+lGf+dy+e+lk+yl++yr
  GSBRNA2T00008339001  45 KEQDRLLPIANIGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAEQLKKYLNRYR 134
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                           +egek
  GSBRNA2T00008339001 135 VIEGEK 140
                          ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-5338148IPR009072Histone-fold
SuperFamilySSF471132.64E-4047149IPR009072Histone-fold
PfamPF008086.0E-2850114IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-197896No hitNo description
PROSITE patternPS0068508197IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-1997115No hitNo description
PRINTSPR006151.3E-19116134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAGNYPSFQN PIPRFQNYNF ASTSSHHHQH HDGLVVEQEE NMVIKEQDRL LPIANIGRIM  60
KNILPPNAKI SKEAKETMQE CVSEFISFVT GEASDKCHKE KRKTVNGDDI CWAMANLGFD  120
DYAEQLKKYL NRYRVIEGEK SNHHGKGGAK SSPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4444134191Transcription factor HapC (Eurofung)
4g92_B1e-4444134191Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.228470.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008339001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876650.0KC787665.1 Brassica napus transcription factor subunit NF-YB5 (NF-YB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634509.11e-115PREDICTED: nuclear transcription factor Y subunit B-5
RefseqXP_022558005.11e-115nuclear transcription factor Y subunit B-5
SwissprotO822482e-99NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A078ITC51e-114A0A078ITC5_BRANA; BnaC04g00090D protein
TrEMBLA0A0D3BNI41e-114A0A0D3BNI4_BRAOL; Uncharacterized protein
STRINGBo4g002290.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-102nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]