PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00008209001
Common NameGSBRNA2T00008209001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 297aa    MW: 32364.8 Da    PI: 6.1842
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00008209001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.21.1e-13221250128
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGl 28 
                          C++Cg  +  Tp++Rrgp+g++tLCnaCGl
  GSBRNA2T00008209001 221 CRHCGIGEksTPMMRRGPEGPRTLCNACGL 250
                          ****865556*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.6E-1175110IPR010399Tify domain
PROSITE profilePS5132014.51375110IPR010399Tify domain
PfamPF062002.9E-1177109IPR010399Tify domain
PfamPF062031.0E-15145187IPR010402CCT domain
PROSITE profilePS5101713.096145187IPR010402CCT domain
SMARTSM004015.1E-7215267IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-9216255No hitNo description
Gene3DG3DSA:3.30.50.101.5E-11219251IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-10220250No hitNo description
PfamPF003204.1E-11221250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDEDVLHGSN GRTHIAETQD PMHHVHYGHH ALQHIHNGSG MVDDHADGSG GGVDTDVPSH  60
PGNITDNRGE VVDRGSEQGD QLTLSFQGQV YVFDSVLPEK VQAVLLLLGG REVPQAPPTG  120
IGASHQNNRV LGLPGTPQRF SMPQRLASLV RFREKRKERN FDKKIRYTVR KEVALRMQRN  180
KGQFTSAKSN NGEAAADGSS WESSQTWAIE GSEAQDQEIS CRHCGIGEKS TPMMRRGPEG  240
PRTLCNACGL IDLSRGAPQT SQNLQVNNEV SNMQEEANLE ADQMMVTVAN DISNSQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00008209001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723631.10.0GATA transcription factor 28-like
SwissprotQ8H1G01e-170GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A078IU190.0A0A078IU19_BRANA; BnaC03g77870D protein
STRINGBo3g181450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-172ZIM-LIKE 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]