PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00008147001 | ||||||||
Common Name | GSBRNA2T00008147001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 302aa MW: 34168.1 Da PI: 6.1688 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSBRNA2T00008147001 78 KKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWK 131 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.9 | 2e-41 | 77 | 166 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE++Fe +kL+perK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d+lk+en++L++++++L++e GSBRNA2T00008147001 77 EKKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDSLKAENDHLQTHNQKLQAE 166 69*************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-20 | 68 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-19 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.3E-16 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-16 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00184 | 126 | 168 | No hit | No description |
Pfam | PF02183 | 2.3E-14 | 133 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSCNNGMSFF PSNFMIQTSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPVEGLEAGN 60 IMNGEEDYSD DGSQMGEKKR RLNMEQVKTL EKNFELGNKL DPERKMQLAR ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD TLKRQFDSLK AENDHLQTHN QKLQAENRVL NTIAFLCLSH 180 YTIMSSRNRE QTESINLNKE TEGSCSNRSD NSSDNFRLDI STAVPSVDST ITGGHPPAPQ 240 TVGRHFFPPA TATTTTTTMQ FFQNSSSGQS MVKEENSISN MFCAMDDHSG FWPWLDQQQY 300 N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00008147001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353311 | 1e-174 | AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022567201.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 0.0 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A078JWT8 | 0.0 | A0A078JWT8_BRANA; BnaCnng70120D protein | ||||
STRING | Bo2g064570.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-165 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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