PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00008067001 | ||||||||
Common Name | GSBRNA2T00008067001, LOC106370740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 426aa MW: 48613.6 Da PI: 8.6637 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.7 | 1.2e-39 | 155 | 320 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ GSBRNA2T00008067001 155 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIMSSlsnplnhggfssceesqtrpalgsmH 244 5799************************************************************98888888777777665555555331 PP TCP 67 sssaseceaesssssasnsssg...........................kaaksaakskksqksaasalnlakesrakarararertrek 129 ++s + + + k+k q+++ +l+k++r+kar+ra++rt+ek GSBRNA2T00008067001 245 --TSS----------------DlcklssmgtvedrgsntnstetrgnkvDGISMRGKRKMLQARTPILKKLSKDEREKARERAKDRTKEK 316 ..222................12222222222223333334455777787777777888888888889********************** PP TCP 130 mrik 133 m+++ GSBRNA2T00008067001 317 MMKR 320 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-41 | 156 | 319 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 157 | 215 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 299 | 316 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MNNNNRRSLS TTTTISEDYM LFPYNDHYSS QALLPFSPCS SINDILIPSN FNTSNNHLDH 60 HYQFLQAPSS FSQFEFVPDF ALVASFLPQN NGHNDNQTIT TNDHNHHHHH PSLLPLNNPV 120 GKSLVEPLET ITTHIEDSRK ISTSQDPKMN KVKKPSRTDR HSKIKTAKGT RDRRMRLSLD 180 VAKELFGLQD MLGFDKASKT VEWLLTQAKP EIIKIMSSLS NPLNHGGFSS CEESQTRPAL 240 GSMHTSSDLC KLSSMGTVED RGSNTNSTET RGNKVDGISM RGKRKMLQAR TPILKKLSKD 300 EREKARERAK DRTKEKMMKR ISQVNILDEE AHNHHDEIVK NNKSHVNCKY FEATPCQEAI 360 EELLCKNDGF AVCNEFLVNK FNSSFPMPNH HRSQGTASSI EQQRQFMDLH HFLERPRDLM 420 YNYHI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00008067001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013666202.1 | 0.0 | transcription factor TCP18 isoform X1 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A078IV77 | 0.0 | A0A078IV77_BRANA; BnaCnng23770D protein | ||||
TrEMBL | A0A3P6AJB6 | 0.0 | A0A3P6AJB6_BRAOL; Uncharacterized protein | ||||
STRING | Bra001710.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-175 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106370740 |