PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00007862001 | ||||||||
Common Name | GSBRNA2T00007862001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29576.8 Da PI: 8.3538 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 14 | 35 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 +g+WT+eEde+l+ ++k +G + GSBRNA2T00007862001 14 KGAWTKEEDERLIAYIKAHGED 35 79******************87 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 52 | 96 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ GSBRNA2T00007862001 52 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 96 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 5 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.597 | 9 | 42 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.76E-21 | 13 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1 | 13 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 38 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.821 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-17 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 52 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-11 | 54 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 60 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEDCCCRL RWINYLRPDL KRGNFTEDED 60 ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIRRK LINRGIDPTT HRPVQESSSA 120 SQDSKPTQLA EAITSNNTIN ISFTNTPKME STSCFQVKPE KISMLTFKEE KDEFLIEEKL 180 PDLNLELRIS LPDVVEGKST RERCFKCSLG MINGMECRCG SMRCDVVGGS SGSTGKGREN 240 SILRFWQETS ILRFWRKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-25 | 13 | 101 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5937 | 1e-171 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00007862001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR076549 | 0.0 | KR076549.1 Brassica napus MYB transcription factor 4-1 (MYB4-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629672.1 | 1e-161 | PREDICTED: transcription repressor MYB4 | ||||
Refseq | XP_013652821.1 | 1e-161 | transcription repressor MYB4-like | ||||
Refseq | XP_013685716.1 | 1e-161 | transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 1e-134 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A078IS44 | 0.0 | A0A078IS44_BRANA; BnaCnng23360D protein | ||||
STRING | Bo3g149450.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-125 | myb domain protein 4 |