PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00007811001 | ||||||||
Common Name | GSBRNA2T00007811001, LOC106430452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 29414.8 Da PI: 5.657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe ++++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k GSBRNA2T00007811001 77 KKRRLNMEQLKTLEKNFELGNKLDSDRKLELARALGLQPRQIAIWFQNRRARSK 130 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 120.7 | 7.4e-39 | 76 | 167 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eq+k+LE++Fe +kL+++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy+aLkr++++lk+en+ L++++++L+++ GSBRNA2T00007811001 76 EKKRRLNMEQLKTLEKNFELGNKLDSDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDALKRQFETLKDENDLLQTQNQKLQAQ 165 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 + GSBRNA2T00007811001 166 VI 167 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.8E-19 | 60 | 134 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-18 | 67 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 72 | 132 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-18 | 75 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.63E-15 | 77 | 133 | No hit | No description |
Pfam | PF00046 | 2.5E-15 | 77 | 130 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.5E-6 | 103 | 112 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 107 | 130 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 112 | 128 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00704 | 125 | 166 | No hit | No description |
Pfam | PF02183 | 3.6E-15 | 132 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSCNNGLAFF PANFSLQNHH QEEEDHPQYL LPSCTPPQDF HGFLGKRSPM QNVEGFCNLE 60 MNGEEDFSDD GSKMGEKKRR LNMEQLKTLE KNFELGNKLD SDRKLELARA LGLQPRQIAI 120 WFQNRRARSK TKQLERDYDA LKRQFETLKD ENDLLQTQNQ KLQAQVIALK SKEPIESINL 180 NKEEGSCSNR SENISGDIRP GHPPPSPTAT TMQFFHNSSP EQRMVKEENS ISNMFCGMDD 240 QTGFWPWFDQ QHYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | RRARSKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24710 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young leaves, in the adaxial domain of leaf primordia and the rib meristem. Expressed in the styles of flowers and siliques. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:17387478}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00007811001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189385 | 0.0 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600291.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-23 | ||||
Refseq | XP_013726696.1 | 0.0 | homeobox-leucine zipper protein ATHB-23 | ||||
Swissprot | Q8LFD3 | 1e-154 | ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23 | ||||
TrEMBL | A0A078IS08 | 0.0 | A0A078IS08_BRANA; BnaC08g48560D protein | ||||
TrEMBL | A0A0D3DR74 | 0.0 | A0A0D3DR74_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FFH2 | 0.0 | A0A3P6FFH2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g076330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26960.1 | 1e-156 | homeobox protein 23 |
Link Out ? help Back to Top | |
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Entrez Gene | 106430452 |
Publications ? help Back to Top | |||
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