PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007545001
Common NameGSBRNA2T00007545001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 162aa    MW: 18275.7 Da    PI: 10.5993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007545001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-182170255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta+eAa+a+++a ++++g
  GSBRNA2T00007545001 21 HYRGVRKRP-WGRYAAEIRDPVK---KARVWLGSFDTAKEAARAYDKANLNFRG 70
                         7********.**********654...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-312178IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212179IPR016177DNA-binding domain
PROSITE profilePS5103223.2482178IPR001471AP2/ERF domain
SMARTSM003805.9E-322184IPR001471AP2/ERF domain
PfamPF008478.9E-122170IPR001471AP2/ERF domain
CDDcd000181.86E-302179No hitNo description
PRINTSPR003671.4E-102233IPR001471AP2/ERF domain
PRINTSPR003671.4E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAPTVKTAAV KTNVSEKKEH HYRGVRKRPW GRYAAEIRDP VKKARVWLGS FDTAKEAARA  60
YDKANLNFRG AKAKTNFPYP NFVHDESPSQ SRTVVSSKTI SDLNLETRFP FPKIQVKSGM  120
FFIESSRSES EGSSVVMDRS PERPSRLPLD FDLNFPPKPE T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-221878263ATERF1
3gcc_A4e-221878263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.140860.0seed
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007545001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8877551e-31DQ887755.1 Brassica rapa subsp. pekinensis putative ethylene-responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022569777.11e-116ethylene-responsive transcription factor 11-like
SwissprotQ9C5I33e-48ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A078JZ321e-114A0A078JZ32_BRANA; BnaCnng69830D protein
TrEMBLA0A3P6EHB71e-114A0A3P6EHB7_BRAOL; Uncharacterized protein
STRINGBo5g055860.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.17e-50ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]