PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007213001
Common NameGSBRNA2T00007213001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 284aa    MW: 32427.7 Da    PI: 4.653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007213001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07160204655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  GSBRNA2T00007213001 160 SIAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 204
                          567899*****************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-10152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.335154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-10158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-5160204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-4176207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSSMDCLSHF FDWDQPIQLQ DCFIPDADTT ILETDKEAPS QTLLELTDLD YLCDQFLPPQ  60
ETCLPYPKTE IFDETHDLNS FLPAPKLQKL VNSSYQCHNH NHFSSPNPNF FNYYDELDLA  120
PEASIFPELQ APDFPLEFKV GRGDEYRSHG TKKPTLSSQS IAARERRRRI AEKTHELTKL  180
IPGGQKLNTA EMFQAAAKYV KFLQSQVGIL QMMQTAKKTH TSDVEIETRF LLGSQAIQEK  240
LSTDEVCLVP CEMVRDLASE ESIWRNPMIF REINKLLSTD LAN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007213001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896552e-68AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691709.20.0LOW QUALITY PROTEIN: transcription factor bHLH53
SwissprotQ84RD01e-120BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078IRR00.0A0A078IRR0_BRANA; BnaCnng22590D protein
STRINGBo4g039270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-111bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]