PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00006662001 | ||||||||
Common Name | GSBRNA2T00006662001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 213aa MW: 24399 Da PI: 5.4276 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 67.2 | 5.5e-21 | 27 | 80 | 96 | 150 |
DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 + le s+lP+e+ + vfrc+rvss+dd++ee+aYqtav+igG+vfkGiLydq GSBRNA2T00006662001 27 NLYGLESSHLPPEIL-PTVFRCTRVSSIDDEDEEYAYQTAVNIGGYVFKGILYDQ 80 345678889****96.78************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03759 | 5.8E-7 | 1 | 29 | IPR005512 | PRONE domain |
Pfam | PF05142 | 3.2E-18 | 31 | 80 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 7.7E-21 | 42 | 80 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043547 | Biological Process | positive regulation of GTPase activity | ||||
GO:0005089 | Molecular Function | Rho guanyl-nucleotide exchange factor activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAKRMLGEDM SGSAEGVCPA ISNAITNLYG LESSHLPPEI LPTVFRCTRV SSIDDEDEEY 60 AYQTAVNIGG YVFKGILYDQ EILIPHELTF LRFTLWQRLR SILLSPLRTK SGLKRERESI 120 IPKRGKGSIG TGWFVNNYPT RNLQFGMYKI ETVNGEISLE PENMGMKEWL KENVKEEEYV 180 VMKAEVEVLE EMMRSKTIKW WISFSWNASH GY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14557 | 1e-109 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00006662001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189558 | 8e-52 | AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence. | |||
GenBank | GU205268 | 8e-52 | GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078G1F9 | 1e-155 | A0A078G1F9_BRANA; BnaC01g31760D protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 6e-26 | SHI-related sequence 7 |
Publications ? help Back to Top | |||
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