PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006425001
Common NameGSBRNA2T00006425001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 445aa    MW: 49656.1 Da    PI: 5.756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006425001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-151966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WTt Ed +l ++v++ G g+W+++ +  g+ R++k+c++rw ++l
  GSBRNA2T00006425001 19 KGPWTTTEDAILTEYVRKRGEGNWNAVQKNSGLLRCGKSCRLRWANHL 66
                         79******************************99**********9986 PP
2Myb_DNA-binding51.52.3e-1672115146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T++E++++++++++lG++ W++ a+ ++ gRt++++k++w++
  GSBRNA2T00006425001  72 KGSFTPDEEKIIIELHAKLGNK-WARMASQLP-GRTDNEIKNYWNT 115
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1021466IPR017930Myb domain
SuperFamilySSF466891.52E-2816113IPR009057Homeodomain-like
SMARTSM007173.2E-111868IPR001005SANT/Myb domain
PfamPF002496.9E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-212073IPR009057Homeodomain-like
CDDcd001671.57E-82166No hitNo description
PROSITE profilePS5129425.16467121IPR017930Myb domain
SMARTSM007171.1E-1571119IPR001005SANT/Myb domain
PfamPF002492.3E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2574120IPR009057Homeodomain-like
CDDcd001671.65E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDGGGETSTA AKEARGLKKG PWTTTEDAIL TEYVRKRGEG NWNAVQKNSG LLRCGKSCRL  60
RWANHLRPNL RKGSFTPDEE KIIIELHAKL GNKWARMASQ LPGRTDNEIK NYWNTRMKRR  120
QRAGLPLYPH EIQHLGIGND DEFEIRCFQF PNQDHPNHQN MIQYTNSSNT SPSSSSFSSS  180
SSQPPKELCL DPLISTNPGL NQIPNMFSPY NNSFENDNKQ FGFSLTFSSS SSSNELCNPD  240
QLLELMSENL DTNVASKKDI DVLSLMGDHE TIPSYFSLGL DTTVLELPSN QTPCTSNIMH  300
DNNVHLDSPA GNSGLLDALL EESRALSRGG IFKDARVSSS GLCEFQDKRV KMDFENRLID  360
HLSSSHQSSF ESNSNLYEKH NEATMLKATV DDDDDDMLKS LLNSFPSTTP LPDWVEPHKP  420
PPSSNVDPVA SLGSSYWRNI PRIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29171205107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in a small patch of cells on the innermost side of the hypocotyl hook of the germinating seedling, in the subapical pith cells of plants growing vegetatively, in a similar zone of expanding cells both in developing inflorescence stems, and below mature flowers and elongating siliques (PubMed:11743113). Accumulates in the pollen tube nucleus during pollen tube growth through the pistil (PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:23791732}.
UniprotTISSUE SPECIFICITY: Present mostly in flowers, siliques and floral shoot tips (PubMed:11743113, PubMed:25268707). Expression is restricted to the subapical pith cells of both vegetative and flowering plants and to the hypocotyl hook (PubMed:11743113). Expressed in pollen grains and pollen tube (PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006425001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634909.10.0PREDICTED: transcription factor MYB28-like
SwissprotO808830.0MB101_ARATH; Transcription factor MYB101
TrEMBLA0A078G1G80.0A0A078G1G8_BRANA; BnaA04g18810D protein
STRINGBo4g178040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.10.0myb domain protein 101
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]
  3. Xue T,Liu Z,Dai X,Xiang F
    Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
    Plant Sci., 2017. 262: p. 182-189
    [PMID:28716415]