PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00006376001

Common Name

GSBRNA2T00006376001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 240aa MW: 26437.1 Da PI: 7.1423

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00006376001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.2e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC ++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP+yG+v+ i++lqqq+ + GSBRNA2T00006376001 7 PCGACKFLRRKCIEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDQDRCDAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVS 96 7*********************9979********************************************************** PP DUF260 90 lkaelallkee 100 l+a+++ll+ee GSBRNA2T00006376001 97 LQAQVVLLREE 107 ***999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.593	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-35	7	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGGLGSPCGA CKFLRRKCIE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDQD 60 RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEASR KFPQGDCSEQ 120 GEFLAQDTPQ DLHSWFHQVV SDSNLNQMSD VASTSIDHDE SLCRDNKVVM KKQVVFGVIL 180 LALFLIFINA KQVEATRLLG TTVDSEIRSV FQSLQKGTVP ESGRNRCTHI PKGSGKCHG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-36	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	7e-36	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00006376001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	1e-142	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141174.1	1e-123	PREDICTED: LOB domain-containing protein 14-like
Refseq	XP_013747189.1	1e-123	LOB domain-containing protein 14-like
Refseq	XP_013747190.1	1e-123	LOB domain-containing protein 14-like
Swissprot	Q9SJW5	4e-93	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	A0A078G369	1e-177	A0A078G369_BRANA; BnaA04g18380D protein
STRING	Bra021737.1-P	1e-176	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	2e-77	LOB domain-containing protein 14

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]