PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006243001
Common NameGSBRNA2T00006243001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 294aa    MW: 33179.1 Da    PI: 6.5306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006243001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-19137187256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a++  + kl+g+
  GSBRNA2T00006243001 137 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDLQAFKLRGH 187
                          59****999.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-33136195No hitNo description
SuperFamilySSF541715.17E-23137195IPR016177DNA-binding domain
SMARTSM003801.2E-37137200IPR001471AP2/ERF domain
PROSITE profilePS5103223.933137194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-31137195IPR001471AP2/ERF domain
PRINTSPR003672.7E-11138149IPR001471AP2/ERF domain
PfamPF008477.0E-14138187IPR001471AP2/ERF domain
PRINTSPR003672.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFDEELNLC TKGKSIVPSS GEASSTTSPR SIKKMRNPDH RSKPYFPFSS PYSNSLPAFP  60
FSLDPTIQNQ QQQQLGYLPI NPTIQGQNQM ISFSPQQPQQ HQQYMFKYWS DTLNLSPRGR  120
MMMMNQKSVL PYSSTKLYRG VRQRQWGKWV AEIRKPRSRA RLWLGTFDTA EEAAMAYDLQ  180
AFKLRGHNAT LNFPERFVNK EIEPSDSAGA SSSLHEKQPE TPQPEEQKEV NLESKEVAVS  240
DGVVEEGMAE AWFNAVAAGW GPESPLWDDL DNSQFSQSST SSSASCPMRP FSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20136196162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006243001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669964.10.0ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-131ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A078G1Y40.0A0A078G1Y4_BRANA; BnaC01g20660D protein
TrEMBLA0A3N6SX780.0A0A3N6SX78_BRACR; Uncharacterized protein
TrEMBLA0A3P6FX330.0A0A3P6FX33_BRAOL; Uncharacterized protein
STRINGBo1g051230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-114ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]