PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006095001
Common NameGSBRNA2T00006095001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 706aa    MW: 77655.2 Da    PI: 7.1227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006095001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-21104159156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k
  GSBRNA2T00006095001 104 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 159
                          688999***********************************************999 PP
2START1601.8e-502554531206
                          HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
                START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                          ela +a++elvk+a+ +ep+W +ss+++ +                +++++g+v+ ++  lve+l+d+  +W e+++    k +t+e is
  GSBRNA2T00006095001 255 ELAVSAMDELVKMAQTSEPLWIQSSKGKRE-------------MLNPSKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNSTIEIIS 330
                          57899********************33322.............5678999*******************.******************** PP

                          TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                          sg      ga++lm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd  +++   s ++R   lpSg+l+++++ng+ kvtw++h
  GSBRNA2T00006095001 331 SGmggtrnGAIHLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRISERG-GSASAR---LPSGCLVHDMPNGYAKVTWIDH 416
                          ********************************************************98.788888...********************** PP

                          EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +++++  +h  +r+lv+sgla+g k+wv++lqrqce+
  GSBRNA2T00006095001 417 TEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 453
                          ***********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-2189161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-2192161IPR009057Homeodomain-like
PROSITE profilePS5007117.621101161IPR001356Homeobox domain
SMARTSM003894.9E-20102165IPR001356Homeobox domain
PfamPF000461.2E-18104159IPR001356Homeobox domain
CDDcd000863.78E-19104161No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084842.981246456IPR002913START domain
SuperFamilySSF559613.3E-28249454No hitNo description
CDDcd088752.48E-100250452No hitNo description
SMARTSM002343.8E-38255453IPR002913START domain
PfamPF018522.2E-43256453IPR002913START domain
SuperFamilySSF559611.79E-21483697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MNFSGFLHHD DGKTPGGETV GGGNHFFSPA AAMSGGPVQF SSPRLSLGLQ TNVENKGGEV  60
GRTGESYEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP LKKKKRYHRH TPQQIQELES  120
VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE  180
NMSVREAMRN PMCGNCGASA HQLRIENSRL KDELDRLCAL AGKFINRSDD AGSHQLPNST  240
LKLGVGVDEK SLYLELAVSA MDELVKMAQT SEPLWIQSSK GKREMLNPSK EVGMVIINSL  300
ALVETLMDSE RWAEMFPCMI AKNSTIEIIS SGMGGTRNGA IHLMQAELQL LSPLVPVRQV  360
TFLRFCKQHA EGVWAVVDVS VDRISERGGS ASARLPSGCL VHDMPNGYAK VTWIDHTEYD  420
ETNIHHSYRP LVSSGLAFGS KRWVSALQRQ CESLAILMSS AIPNRNKPTP AISSIGKKSM  480
LRLAQRMTEN FCRGVCASSS HKWSKLDIGN IDEDVRIMTR KNVDDSGEPP GILLSAATSV  540
WVPVTPRRLF DFLRDELLRS EWDILSNGGP MQEIANIFKG QDHSNSVSLL RSTAMNASQS  600
SMLILQETSI DASGAVVVYA PVDIPAMHAV MNGGDSAYVA LLPSGFAILP DGQGTEETGS  660
LLTVAFQILV NSLPTAKLNV ESIETVSNLI SCTVQKIRAA LRCDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.222901e-75flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006095001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013692684.10.0homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A078G2K70.0A0A078G2K7_BRANA; BnaC04g04470D protein
STRINGBra004934.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]