PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006083001
Common NameGSBRNA2T00006083001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 673aa    MW: 75193.7 Da    PI: 5.9859
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006083001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822147.41.2e-45601911131
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+ ++ ++++  s+  ++
  GSBRNA2T00006083001  60 GGSRRSRPVEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTKPPAVVAGSSASHQ 149
                          689*******************************************************************77777766677777777777 PP

               DUF822  91 esslq.sslkssalaspvesysaspksssfpspssldsisla 131
                          +s+      + s  +sp+e   +++k +  p ps +d  s++
  GSBRNA2T00006083001 150 SSPPAlRGGSLSGHRSPTELNTCRMKGVFAPTPSPYDVQSSE 191
                          78877344555889*********************9987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.1E-3861186IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.73E-170227670IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.7E-185230669IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.4E-92236655IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63267281IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63288306IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63310331IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060314322IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007504.5E-63403425IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63476495IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63510526IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63527538IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63545568IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-63585607IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MVTDMQKLLG TSEEDEEEEE MDADVKEEDD GNRGAHAASG SSNDEFMFQQ TMQDQVDTPG  60
GSRRSRPVEE KERTKLRERH RRAITARILG GLRRHGNYNL RVRADINDVI AALAREAGWV  120
VLPDGTTFPS KSQGTKPPAV VAGSSASHQS SPPALRGGSL SGHRSPTELN TCRMKGVFAP  180
TPSPYDVQSS ELVGSLNKAD GLIGCSVDVI NSKQILEIPP NMTEQDFSGT PYVPVYVMLP  240
LGVINMKCEL ADRDGLLKHL RILKSIQVDG VKVDCWWGIA ECHSPQEYNW NGYRQLFQIV  300
RDLNLKIQVL MSFHECGGNV GDDVCIPLPH WVAEIGRTNP DIYFTDREGR RNPECLSWGI  360
DKERVLRGRT ALEVYFDYMR SFRIELAEFV EDGVISMVEI GLGPCGELRY PSCPIKHGWR  420
YPGVGEFQCY DKYLLKSVRK AAESRGHPFW ARGPENAGSY NSQPQGTGFF CDGGDYDGLY  480
GRFFLKWYSQ FLIDHADKVL SLAKLVFDTS CIAAKLPDVH WWYRTASHAA ELTAGFYNPS  540
NRDGYTEIAS TLKKHGAALS FVSGEVQVLN RPDDFSAALG EPEAVAWQVL NAAWDTDTPI  600
ARENSLPCHD RVGFNKMLES VKFPNDPDRR HLSSFAYSRL VPALMEGHNL VEFDRFVKKL  660
HGEAVMDHHQ QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13923266311444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.272640.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006083001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748222.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A078G2J70.0A0A078G2J7_BRANA; Beta-amylase
STRINGBo4g025050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]