PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00005548001

Common Name

GSBRNA2T00005548001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 284aa MW: 32422.5 Da PI: 9.8771

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00005548001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.6	4.5e-38	7	168	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................sss 68 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s++ GSBRNA2T00005548001 7 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsnqfkhggfssgddsqtrpalgSTE 96 5799**********************************************************99999999888877776666666333 PP TCP 69 sasec....eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++s+ + + ++ k+k s +++ +++k+ rakar+ra++rt ek +++ GSBRNA2T00005548001 97 TSSDLcefaS-------------VwtvedrcsntsmtenkvDGRTMRGKRKMS-QRTPILKEMSKDARAKARERAKDRTMEKIMKR 168 3323223231.............022222222233344433233333333333.33334678889***************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-40	8	167	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.724	9	67	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.467	147	164	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MKNAKKPSRT DRHSKIKTAK GTRDRRMRLS LDVAKELFGL QDMLGFDKAS KTVEWLLTQA 60 KPEIIKIANS LSNQFKHGGF SSGDDSQTRP ALGSTETSSD LCEFASVWTV EDRCSNTSMT 120 ENKVDGRTMR GKRKMSQRTP ILKEMSKDAR AKARERAKDR TMEKIMKRRP QVNAVEEVEA 180 HNQHDEVVKN NNSGVNWTTS FEVTPCGENM EELCKNNRFA VYNDFVVNKK DHISEESYNM 240 ISQLNSSFPM LTPHRSQGAA TSIEQQQQQV RDVHHFLYNY HNM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00005548001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112674.1	0.0	PREDICTED: transcription factor TCP18-like isoform X2
Swissprot	A1YKT1	1e-123	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A078FVV1	0.0	A0A078FVV1_BRANA; BnaA01g26700D protein
STRING	Bo1g117490.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-115	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]