PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00005539001 | ||||||||
Common Name | GSBRNA2T00005539001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34370.5 Da PI: 6.1495 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.1 | 1.2e-55 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++kv++ +++ +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk GSBRNA2T00005539001 5 LPPGFRFHPTDEELITHYLCRKVSDIGFTA-KAVVDVDLNKCEPWDLPDKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDK 93 79*************************999.88***************988999************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++ +g lvg+kktLvfykgrapkgek++Wvmheyrle GSBRNA2T00005539001 94 DIYR-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-65 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.251 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTAKAVVDV DLNKCEPWDL PDKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKDIYRSGV LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKQPFKPAK EEWVVCRVFQ KSTTTKKPQE QQPDSSFGSP CDANSSMANE 180 FEDIELPNLN SNSSTVDYNN IHQQYSQNNV YSDNTTSTAG LNMNMNMNMN VNMANLPAWT 240 TSLLGPPLSP INSLLLKAFQ IRNSYNINPS LLQQGVSNVM QDGSSSSQPQ PQDEAFNMDS 300 LW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-59 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-59 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-59 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00005539001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026658 | 5e-85 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. | |||
GenBank | CP002686 | 5e-85 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009112744.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-82 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A078FZB9 | 0.0 | A0A078FZB9_BRANA; BnaA01g26760D protein | ||||
STRING | Bra037585.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-168 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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