PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005133001
Common NameGSBRNA2T00005133001, LOC106416359, LOC106416567
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 298aa    MW: 32313.9 Da    PI: 9.2266
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005133001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.7e-381777262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  GSBRNA2T00005133001 17 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 77
                         56789*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-332075IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9012175IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-272175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQSKNMIVSP SHQQQPPQPQ LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT  60
LRNVPVGGSY RKNKRVKRPA TTTAASTAST TTSSSPNNPH HQISHFPSMN HHPLFYGLSD  120
HVSSCNSLPM FPSRFSDPPK TSSGLEGEFP SSGFNGLGLG LPHHMSHDQT INGSFINSST  180
TNKPFLPSSL FGSSVSSSSS TLLQHAHKPM NNNGEMMGQS HLQTLASLQD LHVGGNNEDV  240
NKEGKLVEIS GDMNGFMSSS SLDPSNYHNI WNNASVSSGA WLDPTNNIVG SSLTSLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005133001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530650.0AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712677.20.0dof zinc finger protein DOF1.4-like
RefseqXP_013712954.20.0dof zinc finger protein DOF1.4-like
SwissprotQ9FZA41e-140DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JYP50.0A0A078JYP5_BRANA; BnaA09g53950D protein
TrEMBLA0A397XY530.0A0A397XY53_BRACM; Uncharacterized protein
STRINGBra032891.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-130Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]