PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004998001
Common NameGSBRNA2T00004998001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26837.9 Da    PI: 5.0758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-1968121457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++t+eq+  Le  Fe+++++   ++e++A +lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00004998001  68 KRKLTDEQVIMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 121
                          4589************************************************95 PP
2HD-ZIP_I/II116.71.3e-3767158293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eqv +LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ +  +++Le++v +L+e+l
  GSBRNA2T00004998001  67 RKRKLTDEQVIMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDSDVLGQCQLESQVIKLTEQL 156
                          8***************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          +e
  GSBRNA2T00004998001 157 SE 158
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.08E-1861124IPR009057Homeodomain-like
PROSITE profilePS5007116.56862122IPR001356Homeobox domain
SMARTSM003891.1E-1765126IPR001356Homeobox domain
CDDcd000866.57E-1567123No hitNo description
PfamPF000469.9E-1768121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2069129IPR009057Homeodomain-like
PRINTSPR000312.4E-593102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5102118IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDQTVLSSQV YPYTIQTQSE CIIVNQMDGS SSGDGSKPVK RRRKRRSKGS SSATNEDDVR  60
AMERMFRKRK LTDEQVIMLE YSFENEHKLE SGRKEKIAGE LGLDPRQVAV WFQNRRARWK  120
NKKLEEEYAK LKSQHDSDVL GQCQLESQVI KLTEQLSEAQ NEIRKLSERL VVQETSTNSS  180
SSSFSVEAND APTDFEFSPM DTINDNIPLY MLDNNYYLQN MEYWDGLYVQ F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KRRRKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004998001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892580.0AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130555.11e-170PREDICTED: homeobox-leucine zipper protein ATHB-53-like
SwissprotQ9LVR01e-104ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A078IQH11e-171A0A078IQH1_BRANA; BnaA02g34710D protein
TrEMBLA0A398AH211e-171A0A398AH21_BRACM; Uncharacterized protein
STRINGBra031819.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-102homeobox 53
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]