PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004900001
Common NameGSBRNA2T00004900001, LOC106395083
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 267aa    MW: 30392.3 Da    PI: 7.0475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004900001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-192675154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+
  GSBRNA2T00004900001 26 CRYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDKAALKLF 75
                         78*****999.**********965...5************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-292686No hitNo description
PfamPF008473.6E-132674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-292785IPR001471AP2/ERF domain
PROSITE profilePS5103222.4582784IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-212785IPR016177DNA-binding domain
SMARTSM003801.4E-322790IPR001471AP2/ERF domain
PRINTSPR003673.0E-102839IPR001471AP2/ERF domain
PRINTSPR003673.0E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDKA ALKLFDHEAY LNLPHLQRKQ GPPVNNTQRF KWVPSKKFIS MFPSSRGLLN  120
VNAQPSLHII QQRLDELKKN GLLSQSYFST SLLDEKTSKM LEGDDQKKPE MDLNEFLQQM  180
GILKDKSKAE ASEVAECHYT PPWSEQEKSG GPFTDQSLSW ESMIDEMPGS DTLVMHFDSN  240
NFGSYDDFED DLGFPSIWNF CGSLDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-172884360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004900001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894690.0AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691064.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX51e-141DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A078IM010.0A0A078IM01_BRANA; BnaC04g55440D protein
STRINGBo4g111040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-132ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]