PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004808001
Common NameGSBRNA2T00004808001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 472aa    MW: 53480.3 Da    PI: 7.0048
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004808001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14.1e-103183551954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+++e+  LAk++gL+++qV +WF N R +
  GSBRNA2T00004808001 318 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 355
                          665559******************************88 PP
2BELL119.81.2e-38181252172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+ ag+g+akpYts+Al++iSrhFrcL+dai+eqi
  GSBRNA2T00004808001 181 ERQELQSKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIGAGVGAAKPYTSVALNRISRHFRCLRDAIKEQI 252
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-49122250IPR006563POX domain
PfamPF075262.8E-45128248IPR006563POX domain
PROSITE profilePS5007112.422296359IPR001356Homeobox domain
CDDcd000861.85E-11299360No hitNo description
SMARTSM003896.5E-10299363IPR001356Homeobox domain
SuperFamilySSF466897.27E-18300367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28302365IPR009057Homeodomain-like
PfamPF059205.7E-18316355IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAVYYPTSTV GMQSLYQEPI YLNEQASSSS AGAGANCLEI PNSVPNEMVF IPPTSDTSLN  60
GNVTVSSNDL SFHGGGLSLS LGNQIQYHYQ NLSNQLSYNE ENGKSHHHQH HHQVPSFGFY  120
NNGFVSSVLR SRYLKPTQQL LDEVVSVKKT KNNEKGQDFT NGSKPNDTNN TENNEELSPS  180
ERQELQSKKN KLLTMVDEVD KRYNQYYHQM EALASSFEIG AGVGAAKPYT SVALNRISRH  240
FRCLRDAIKE QIQVIRGKLG EKETAEEQGE RIPRLRYLDQ RLRQQRALHQ QLGMVRPTWR  300
PQRGLPENSV SILRAWLFEH FLHPYPKESE KIMLAKQTGL SKNQVANWFI NARVRLWKPM  360
IEEMYKEEFG DSSELLSNSN QGSSSSNKKN RMNETSQLKH EDTSSSQQQN HGNNIPYTSD  420
AEENLIFADP KPDSLMNYNG FGVVDYNGYI GLGNQQDGRF SNPHQLHDFV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16305363563Homeobox protein Meis2
3k2a_B5e-16305363563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004808001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693278.10.0BEL1-like homeodomain protein 3
RefseqXP_013693285.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS90.0BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A078ISQ90.0A0A078ISQ9_BRANA; BnaCnng21740D protein
STRINGBo2g083780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38201959
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.20.0BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]