PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00004236001 | ||||||||
Common Name | GSBRNA2T00004236001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 328aa MW: 35914.3 Da PI: 8.2047 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76 | 3.9e-24 | 100 | 142 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk++e GSBRNA2T00004236001 100 LEPGRCRRTDGKKWRCSKEVVSNHKYCERHLHRGRPRSRKHVE 142 69***************************************97 PP | |||||||
2 | QLQ | 51.1 | 4.1e-18 | 52 | 83 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ GSBRNA2T00004236001 52 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 83 9*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 8.7E-10 | 51 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.71 | 52 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.1E-11 | 52 | 82 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.629 | 99 | 143 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-19 | 101 | 142 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDFLKVSDKT TTLYRNNSLF GLNQQQMEIH PHPHVITPHA GNGVMGCYYY YPFTNAQLKE 60 LERQAMIYKY MIASIPVPFD LLVSSSYAPP CNNKNAVGDL EPGRCRRTDG KKWRCSKEVV 120 SNHKYCERHL HRGRPRSRKH VELPYSRPSN IGGGSEKNRI LSSIKDTTVV EPKEVSSALS 180 NYRGLEIFPA SASNEQENKY LNFIDVWSDG VRSSEKLSTP ASSSPNGNPS LYSLDLSMGG 240 NSLMGHDEMG LRVIGPGRDD PHGYGPYGAV VSSSLDEMSR WLAPTSATPG GPLAEILRPN 300 PSSAFSGEME ANSLTATPTP SSSPLST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.17500 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00004236001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015476 | 4e-98 | AB015476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6. | |||
GenBank | AB493791 | 4e-98 | AB493791.1 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660. | |||
GenBank | AK176109 | 4e-98 | AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21. | |||
GenBank | BT010882 | 4e-98 | BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds. | |||
GenBank | CP002688 | 4e-98 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619119.1 | 0.0 | PREDICTED: growth-regulating factor 7 | ||||
Swissprot | Q9FJB8 | 1e-166 | GRF7_ARATH; Growth-regulating factor 7 | ||||
TrEMBL | A0A078IPA6 | 0.0 | A0A078IPA6_BRANA; BnaC02g44780D protein | ||||
STRING | Bo2g044580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12106 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-161 | growth-regulating factor 7 |
Publications ? help Back to Top | |||
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