PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003914001
Common NameGSBRNA2T00003914001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 387aa    MW: 43333.7 Da    PI: 8.7372
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003914001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.2e-10266306545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k ++r+ +NRe Arrs +R  + i +Leekv++Le+e  +L
  GSBRNA2T00003914001 266 KYAKRMLSNREGARRSVKRTAQHILNLEEKVQTLEKEGVTL 306
                          779*********************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-8262326IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.8E-7264339No hitNo description
PROSITE profilePS502178.611264327IPR004827Basic-leucine zipper domain
PfamPF001704.1E-7266307IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.02E-6267313No hitNo description
CDDcd147021.98E-7269316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDRQAENVPS QTSFVLSTQF PCPPSGQNRG SMPPPRRSSL PPLPPKRPTT TTTTRHQQIG  60
LQNFNPGPRL LPPQSPVFRS WTPMSSPAPS SSFQYLQSAP PVAYHNAALP PRPPTTSVSA  120
RGSAYSGNDS AVFPSMDAMK MIYPEPIEMP VGVNYSKEGH GEPAGFMDEQ VYMDLDEIFD  180
FSTKDDDVAR IGSGSSENNK RNAGVKKRAA PSRKTRRKSV SPSVDCNNLN NWKSSVAIEK  240
GMFTESQMNE IARSKTLQKY VVTDPKYAKR MLSNREGARR SVKRTAQHIL NLEEKVQTLE  300
KEGVTLTVHT SFAEKKKLGL EEENKQLRIR LQEIQDQSKR ANEINWVKQK GTEEVFPDWD  360
TTMDEFLLEQ LNELNEEPET NNCGFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003914001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894800.0AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601787.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A078JXW60.0A0A078JXW6_BRANA; BnaAnng33910D protein
STRINGBra031173.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2154335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-15bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]