PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00003439001

Common Name

GSBRNA2T00003439001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 30865.7 Da PI: 8.9937

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00003439001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	129	183	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k GSBRNA2T00003439001 129 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 183 677889***********************************************98 PP
2	HD-ZIP_I/II	122.9	1.6e-39	129	218	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr + GSBRNA2T00003439001 129 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-A 217 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l GSBRNA2T00003439001 218 L 218 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.9E-28	2	97	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.7E-18	110	183	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-18	115	186	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	125	185	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	127	189	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	129	183	IPR001356	Homeobox domain
CDD	cd00086	3.37E-16	129	186	No hit	No description
PRINTS	PR00031	7.2E-6	156	165	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	160	183	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.2E-6	165	181	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.8E-8	185	219	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.5E-23	185	228	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MMMGKDDLGL SLSLGFAQNQ HPLHLNLKPT SSPMSNHQMF PWNQTFVSSS NHQNHQSLRK 60 IDVNSFPSTV ELEEETGVSS PNSTISSTVS GKRRSERQGS GDDLDIALDR SSSRGTSDEE 120 EEYGGEACRK KLRLSKDQSA VLEDTFKEHN TLNPKQKLAL AKKLGLTARQ VEVWFQNRRA 180 RTKLKQTEVD CEYLKRCVEK LTEENRRLEK EAAELRALKL SPGLYGKMSP PTTLLMCPSC 240 ERVGGPSNHS QRSVSLNPWL QMGHGSTFDV KHPRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	185	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00003439001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441252	1e-158	AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1.
GenBank	AK228587	1e-158	AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21.
GenBank	ATU09332	1e-158	U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds.
GenBank	AY087322	1e-158	AY087322.1 Arabidopsis thaliana clone 34167 mRNA, complete sequence.
GenBank	BT005756	1e-158	BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
GenBank	BT006112	1e-158	BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013669968.1	0.0	homeobox-leucine zipper protein HAT1-like
Swissprot	P46600	1e-178	HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBL	A0A078JUH9	0.0	A0A078JUH9_BRANA; BnaCnng68370D protein
TrEMBL	A0A3P6FCH1	0.0	A0A3P6FCH1_BRAOL; Uncharacterized protein
STRING	Bo1g051520.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1563	26	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	1e-146	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Tan W, et al. Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought. PLoS Genet., 2018. 14(4): p. e1007336 [PMID:29659577]