PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00003368001 | ||||||||
Common Name | GSBRNA2T00003368001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 22363.3 Da PI: 9.6553 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.5e-20 | 66 | 114 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ a+ +++g GSBRNA2T00003368001 66 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDSAAIRIRG 114 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.816 | 65 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 65 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-33 | 65 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-41 | 65 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 66 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-12 | 66 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.41E-34 | 66 | 124 | No hit | No description |
PRINTS | PR00367 | 5.1E-12 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MCGGAVISDF IWSLRRASFA EAEPSQVGYE GCVSIEKRVC SGSVGGEKRK EKKKEGKNKR 60 ERKNMYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFKTAEE AARAYDSAAI RIRGGKAKLN 120 FPNDDSSSTR RNCIIKKNKE VYDTENQQVK QLSEELMAYE DYMGFYQIPY LDGQSSTEDV 180 PQLSLIGNLW SFQDNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-24 | 66 | 122 | 6 | 63 | ATERF1 |
3gcc_A | 8e-24 | 66 | 122 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.17612 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00003368001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002535 | 5e-59 | AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence. | |||
GenBank | AY074645 | 5e-59 | AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds. | |||
GenBank | CP002685 | 5e-59 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118731.1 | 1e-123 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
Swissprot | O22259 | 1e-65 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A078IQS6 | 1e-142 | A0A078IQS6_BRANA; BnaA04g27050D protein | ||||
STRING | Bra021401.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-49 | ERF family protein |
Publications ? help Back to Top | |||
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