PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00003213001

Common Name

GSBRNA2T00003213001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 155aa MW: 16919.3 Da PI: 8.856

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00003213001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	36	75	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ ++++ L++++ + +K + a++L Av+YI L GSBRNA2T00003213001 36 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAVHYIEFL 75 88999************99.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.763	26	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-8	27	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-5	27	80	No hit	No description
SuperFamily	SSF47459	1.83E-10	27	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDFSSNAGMM MENKRNVVCS LEESNIKRHK SDLSSKERKD KVGERISALQ QIVSPYGKTD 60 TASVLLDAVH YIEFLHEQVK VCILLFTRSK RSVSANSTAT LVEIEQYSLS NRGLCLVPME 120 STAGVAQSNG ADIWASVKGP PSPALNVKSQ SPFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00003213001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353054	1e-68	AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009119120.1	9e-97	PREDICTED: transcription factor bHLH113-like
Swissprot	Q7XJU2	2e-76	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A078IPH7	1e-110	A0A078IPH7_BRANA; BnaA10g03490D protein
TrEMBL	A0A3P6CR17	1e-110	A0A3P6CR17_BRACM; Uncharacterized protein
STRING	Bra015450.1-P	3e-96	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	7e-79	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]