PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003204001
Common NameGSBRNA2T00003204001, LOC106371163
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 361aa    MW: 38875.4 Da    PI: 7.5918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003204001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10293338655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  GSBRNA2T00003204001 293 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 338
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14290354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-11291342No hitNo description
Gene3DG3DSA:4.10.280.103.2E-13292352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGGGAGLIRY GSAPGSLLNS MVDEVIGGSN ARDFNYPPPD  60
NFLGDFFAGA DSSSLRSESM TCGVNSSDGQ KHLGSNNNNN NNNKDLLMDR SYGGFNEISQ  120
HKINNHVGGG SSSGSYSLAR QRSSPADFFS YLSGEKNSFS LNQPTSDYNQ QGGSNAGRGP  180
SRLKSQLSFT SHDPLSRISE VNETSVHDGS GHSFSAASFG AATDSWDDGS GSIGFTVTRP  240
TKRPKDMNSG LFSQYSLPSD TSMNYMDNYM QLPEDSVPCK VRAKRGFATH PRSIAERERR  300
TRISGRLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQTLKKEQEN CTCECSERPS  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.80130.0bud| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003204001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666654.10.0transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A078IPH20.0A0A078IPH2_BRANA; BnaA10g03540D protein
TrEMBLA0A3P6D3730.0A0A3P6D373_BRACM; Uncharacterized protein
STRINGBra015456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-172bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]