PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00003011001 | ||||||||
Common Name | GSBRNA2T00003011001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | RAV | ||||||||
Protein Properties | Length: 340aa MW: 39204.2 Da PI: 8.317 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 1.9e-11 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV + +g W A+I+ ++r++lg+f +a eAa+a++ a kl+g GSBRNA2T00003011001 47 TKYKGVVQQQ-NGHWGAQIYAE-----HRRIWLGTFKSAAEAAAAYDSASIKLRG 95 69****9888.8*********5.....5************************998 PP | |||||||
2 | B3 | 91.9 | 4.9e-29 | 170 | 261 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f k+ltpsdv+k++rlv+pkk+a +h +g+ +++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++v GSBRNA2T00003011001 170 FHKELTPSDVGKLNRLVIPKKYAVKHlpfisddqeEGEAVDDVEVVFYDSTMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIV 259 89*****************************98887777799************************************************ PP EE CS B3 82 Fk 83 F+ GSBRNA2T00003011001 260 FY 261 *9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.49E-13 | 47 | 107 | No hit | No description |
Pfam | PF00847 | 2.8E-6 | 47 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.662 | 48 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 48 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-14 | 48 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.8E-19 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-31 | 164 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-27 | 168 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-24 | 169 | 261 | No hit | No description |
SMART | SM01019 | 1.1E-19 | 170 | 275 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-26 | 170 | 262 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.421 | 170 | 273 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MVILHEISNE AKTTTETSGS INSFLRLATK PTVSTTTRIA LSNTATTKYK GVVQQQNGHW 60 GAQIYAEHRR IWLGTFKSAA EAAAAYDSAS IKLRGFDANS HRNFPWSELT VHEPDFQILY 120 TTEAVLNMIR DGSYHHKFRD HVMSRSRMAN FNIVESKQES NKCFSCTQLF HKELTPSDVG 180 KLNRLVIPKK YAVKHLPFIS DDQEEGEAVD DVEVVFYDST MRQWKFRYCY WRSSQSFVFT 240 RGWNGFVKEK NLKEKDVIVF YSCDVPSNVR RLEGQRDKFL MIDVDHKGFV APKEENKMVH 300 NKSEGEMKTE NFFNSKLEDE ETKQEENKGG FMLFGVRIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-26 | 169 | 260 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00003011001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624963.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-179 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A078IPB0 | 0.0 | A0A078IPB0_BRANA; BnaC03g77730D protein | ||||
TrEMBL | A0A0D3BMK1 | 0.0 | A0A0D3BMK1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g179890.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-160 | RAV family protein |
Publications ? help Back to Top | |||
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