PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002968001
Common NameGSBRNA2T00002968001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 424aa    MW: 46824.7 Da    PI: 7.1071
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002968001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.2e-32223278156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSBRNA2T00002968001 223 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 278
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682220280IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28221281IPR009057Homeodomain-like
SuperFamilySSF466891.86E-17221281IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26223278IPR006447Myb domain, plants
PfamPF002493.5E-7225276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASSSELSLD CKPQSYSMLL KSFGDNFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC  60
MQLLNNAVEV YKQQLEAYLA NNNNQSVVTR PVLEEFIPLR NQPEKANNWM TTAQLWSQPE  120
TKPKSIDQTT DQSPKDELAS SPKLGHVDAK QRNGGGAFHP FTKEQHLPEL ALSTEVKRFS  180
PTNEHTNDHG NDESIINSGK KNNNNINSNS NGVSSTTNQS NRKARRCWSP DLHRRFVQAL  240
QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GQGPHLVVLG  300
GIWVPPEYTT AHGGTPTLYH HQVHHHNGNA ATQPPQHFCS SQEFYTTPPT PQPLHHQHFQ  360
TFNGSSAGGA ASNDSAHHQL TDSAADEGKS LESGGGEGKG LAALRQEGED QSNINGSEIT  420
LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14223276154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14223276255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002968001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013692490.10.0myb family transcription factor EFM
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A078IP840.0A0A078IP84_BRANA; BnaA06g39930D protein
STRINGBra025115.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]