PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002713001
Common NameGSBRNA2T00002713001, LOC106398162
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 181aa    MW: 19678.3 Da    PI: 10.0023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002713001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-202271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+tae+Aa+a++ a+++++g
  GSBRNA2T00002713001 22 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEQAARAYDSAAREFRG 71
                         6********.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-372285IPR001471AP2/ERF domain
PfamPF008473.0E-142271IPR001471AP2/ERF domain
PROSITE profilePS5103224.2362279IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-232281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-322279IPR001471AP2/ERF domain
CDDcd000183.34E-312279No hitNo description
PRINTSPR003671.3E-112334IPR001471AP2/ERF domain
PRINTSPR003671.3E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSPTLKNVGH DDAAGRKVKE VHYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEQAAR  60
AYDSAAREFR GSKATTNFPF SGGVDAGNAL GTHVTAREGV CGNNVSGVLA PTVTGFFLDL  120
PHATASREEL VRGFPVRFEP MEMGLSIGLR TTVEVKRDAA DYKLRRDLNL ELSLAPSMDV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-222280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-221880164ATERF1
3gcc_A3e-221880164ATERF1
5wx9_A5e-221287280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002713001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639092.11e-130PREDICTED: ethylene-responsive transcription factor 9-like
RefseqXP_013694210.11e-130ethylene-responsive transcription factor 9
SwissprotQ9FE672e-52ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A078FUQ71e-129A0A078FUQ7_BRANA; BnaC05g02080D protein
TrEMBLA0A0D3C7E01e-129A0A0D3C7E0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EVD41e-129A0A3P6EVD4_BRAOL; Uncharacterized protein
STRINGBo5g004090.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-55erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]