PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00002710001 | ||||||||
Common Name | GSBRNA2T00002710001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 43545.9 Da PI: 7.7504 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.6e-11 | 129 | 152 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+r+G C++Gd C FaHg GSBRNA2T00002710001 129 GEVCPEFRRGGDCSRGDDCEFAHG 152 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.79E-6 | 126 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 126 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 126 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 130 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-6 | 130 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5 | 162 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDIVRPTVEI PPRKLLSSSK SFSGEASPRS SPRKHNWNNK SNKTSTSEQE EDSFNEDNTN 60 TNTNNNKDAK EYCYDSDTDD PYASDHFRMF EFKIRRCTRS RSHDWTDCPF AHPGEKARRR 120 DPRRFQYSGE VCPEFRRGGD CSRGDDCEFA HGVFECWLHP IRYRTEACKD GKHCKRKVCF 180 FAHSPRQLRV LPPENDSGGS SASTSQAKNQ NPCCLFCSGS PTSTLLGNLS HLSRSPSSSP 240 PLSPAHKAAA FSRLRSCAAS AAAAGSVNYK DVLNDLVNSL DSITLAEALQ VSSPSPSPVS 300 AAAAAFANAS SCGLSTQRLH IQQQQQSSPL QFALSPSSPS YLTNSPRASF FSDDYTPRQR 360 EVNEFTPSAV REKTRFEDGS CGDPDIGWVN DLLT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00002710001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696291.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Refseq | XP_013719160.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Refseq | XP_013719299.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9ZWA1 | 0.0 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A078FYG1 | 0.0 | A0A078FYG1_BRANA; BnaC05g02070D protein | ||||
STRING | Bo5g004080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-155 | C3H family protein |
Publications ? help Back to Top | |||
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