PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00002303001

Common Name

GSBRNA2T00002303001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 312aa MW: 33861.4 Da PI: 7.9706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00002303001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.1e-11	245	290	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Ave+Ik Lq GSBRNA2T00002303001 245 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 290 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.056	239	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-14	242	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.03E-11	243	294	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-13	244	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-9	245	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-13	245	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MYPPPSSSKS TVPDGGDAND NGHDSAAGAT RDFSSLGSQT HYNPPRPPPH QRQQHNPNVV 60 GLGDYFPDDP SNTGFDPGAS SSSPLFRHRS SPAGFYDQHL PTANGFSLGR PNGGYGGGER 120 GPPGLKPELR FSGGSSSSSH QERNSLQRIS EVEAAAAAIK GVPSTSMTFG NDHNNWDNSS 180 SHISFTIDEP GKRSKTTDFF TLETQFSMPQ TSLEMARMES MMNIPEDSVP CRTRAKRGCA 240 THPRSIAERE RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVEHIKGLQ HQVESLEKGM 300 ERCTCGACKK R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00002303001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013632282.1	0.0	PREDICTED: transcription factor bHLH129
Swissprot	Q9ZW81	1e-129	BH129_ARATH; Transcription factor bHLH129
TrEMBL	A0A078FXQ2	0.0	A0A078FXQ2_BRANA; BnaC04g02750D protein
TrEMBL	A0A0D3BPI1	0.0	A0A0D3BPI1_BRAOL; Uncharacterized protein
STRING	Bo4g019620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10329	18	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	1e-124	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]