PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00002270001

Common Name

GSBRNA2T00002270001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 800aa MW: 88088.1 Da PI: 6.2487

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00002270001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	501	551	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00002270001 501 EKNVTLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 551 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	490	571	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-28	503	551	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.18E-22	693	784	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.4E-23	697	778	No hit	No description
SMART	SM00666	6.6E-23	699	781	IPR000270	PB1 domain
PROSITE profile	PS51745	21.336	699	781	IPR000270	PB1 domain
Pfam	PF00564	4.0E-17	700	780	IPR000270	PB1 domain
CDD	cd06407	3.43E-36	700	780	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MEHPFASREK GFGYQDIPTE QQMDGLSFGP HDMLNSSSSS ELMNFDSFST WFNTPSPTDL 60 LFSQYGLSTS SHPPETRADI NELSGKRRRV SNQTIPRSLS HSLDEKMLKA LSLFIESSSG 120 SGEGILAQIW TPIKAGDQYI LSTCDQAYLL DPRLSQYREV SRKFTFASKP NQCSSSPGLP 180 GRVFISGVRE WTSNVRYYKR DEYLRMKHAV DNEVRGSIAI PILEEASGTS CCAVMELVTS 240 KEKHDFDVEM ESVCRALQAV NLRTSSIPRP QYLSSNQREA LAEIKDVLRA VCHAHKLPLA 300 LAWLPCNNGP NSLVLCVEET ACYVNDMEME GFVHACVEHC LREKEGIVGK AFVSNHPFFA 360 SDVKACDIGE YPLVHHARKY GLNAAVAIKL RSTHTGEDDY ILELFLPVSM RGSLEQQLLL 420 DSLSGTMQRI CRTLRTVSDV GVTKRSGEIS TCSRSFQTIV LDCELNSNSS DKDNSSTGSQ 480 GTFEQDKSKA RTPEKKKSTT EKNVTLSVLQ QHFSGSLKDA AKSLGVCPTT LKRICRQHGI 540 MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLRFDSATGE FVAAGPTPKD PSSNDDNACE 600 DTSFELLKAK SVGNAVKLED DIITNDSFMD ASGQQCDWMA EQSGFNGKLS SPVTDGMETT 660 IRSMSDSSNS SGAVMMGSSS TSMDNGNKTR THGESGSTTL TVKATYREDT IRFKFESSVG 720 CSQLYKEVGK RLKLQEGSFQ LKYLDDEEEW VLMVTDSDLQ ECLEILYGMG KHTVKFLVRD 780 LPAPIGSSGG SNGYLGTGL*

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MEHPFASREK GFGYQDIPTE QQMDGLSFGP HDMLNSSSSS ELMNFDSFST WFNTPSPTDL  60
LFSQYGLSTS SHPPETRADI NELSGKRRRV SNQTIPRSLS HSLDEKMLKA LSLFIESSSG  120
SGEGILAQIW TPIKAGDQYI LSTCDQAYLL DPRLSQYREV SRKFTFASKP NQCSSSPGLP  180
GRVFISGVRE WTSNVRYYKR DEYLRMKHAV DNEVRGSIAI PILEEASGTS CCAVMELVTS  240
KEKHDFDVEM ESVCRALQAV NLRTSSIPRP QYLSSNQREA LAEIKDVLRA VCHAHKLPLA  300
LAWLPCNNGP NSLVLCVEET ACYVNDMEME GFVHACVEHC LREKEGIVGK AFVSNHPFFA  360
SDVKACDIGE YPLVHHARKY GLNAAVAIKL RSTHTGEDDY ILELFLPVSM RGSLEQQLLL  420
DSLSGTMQRI CRTLRTVSDV GVTKRSGEIS TCSRSFQTIV LDCELNSNSS DKDNSSTGSQ  480
GTFEQDKSKA RTPEKKKSTT EKNVTLSVLQ QHFSGSLKDA AKSLGVCPTT LKRICRQHGI  540
MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLRFDSATGE FVAAGPTPKD PSSNDDNACE  600
DTSFELLKAK SVGNAVKLED DIITNDSFMD ASGQQCDWMA EQSGFNGKLS SPVTDGMETT  660
IRSMSDSSNS SGAVMMGSSS TSMDNGNKTR THGESGSTTL TVKATYREDT IRFKFESSVG  720
CSQLYKEVGK RLKLQEGSFQ LKYLDDEEEW VLMVTDSDLQ ECLEILYGMG KHTVKFLVRD  780
LPAPIGSSGG SNGYLGTGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00002270001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	5e-93	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	CP002685	5e-93	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013692421.1	0.0	protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A078FY26	0.0	A0A078FY26_BRANA; BnaC04g02980D protein
STRING	Bo4g019840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]