PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00001362001

Common Name

GSBRNA2T00001362001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 236aa MW: 26771.1 Da PI: 5.7675

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00001362001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.7	3.6e-43	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + GfrF Pt++el+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r+nr+t+sgyWkat GSBRNA2T00001362001 6 TIGFRFYPTEDELIAFYLRNQLEGRNdDSMHRVIPVLDVFEVEPSHLPNvageRCRGDAEQWFFFVPRQEREARGGRPNRTTDSGYWKAT 95 68********************995555677***********646666666888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ GSBRNA2T00001362001 96 GSPGPVISKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 **************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-47	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	47.324	5	162	IPR003441	NAC domain
Pfam	PF02365	3.7E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAEELTIGFR FYPTEDELIA FYLRNQLEGR NDDSMHRVIP VLDVFEVEPS HLPNVAGERC 60 RGDAEQWFFF VPRQEREARG GRPNRTTDSG YWKATGSPGP VISKDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAVDE TVNFSTIPKL RHEFSLCRVY ITSGSSRAFD RRPVGSLQTE 180 RLLTSDVGVA ETSFRVGSSP ETSMSGGEHV DLSVNTEMVD GLTEPMWEWE QLNWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	5	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	5	167	20	173	NAC domain-containing protein 19
3swm_B	1e-32	5	167	20	173	NAC domain-containing protein 19
3swm_C	1e-32	5	167	20	173	NAC domain-containing protein 19
3swm_D	1e-32	5	167	20	173	NAC domain-containing protein 19
3swp_A	1e-32	5	167	20	173	NAC domain-containing protein 19
3swp_B	1e-32	5	167	20	173	NAC domain-containing protein 19
3swp_C	1e-32	5	167	20	173	NAC domain-containing protein 19
3swp_D	1e-32	5	167	20	173	NAC domain-containing protein 19
4dul_A	1e-32	5	167	17	170	NAC domain-containing protein 19
4dul_B	1e-32	5	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00001362001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126539.1	1e-176	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-154	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A078F7X3	1e-174	A0A078F7X3_BRANA; BnaA02g05600D protein
TrEMBL	A0A398A7Q2	1e-174	A0A398A7Q2_BRACM; Uncharacterized protein
TrEMBL	M4DUJ5	1e-174	M4DUJ5_BRARP; Uncharacterized protein
STRING	Bra020188.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-157	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]