PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001316001
Common NameGSBRNA2T00001316001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 389aa    MW: 44092.1 Da    PI: 6.0634
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001316001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3132.56.3e-41401541123
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          eel+++ wkd+++lk+lke++k+  +++          k  e + ++ m +aQDgiLkYM k me c+aqGfvYgi+ e+gk+v+g+sd+
  GSBRNA2T00001316001  40 EELERKIWKDKQRLKQLKEMSKNGSGKRLL--------KHPEDSTKRMMYQAQDGILKYMSKAMERCKAQGFVYGIVFENGKTVTGSSDN 121
                          8**************999999986544433........6789999********************************************* PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsges 123
                          Lr+WWk+ v+fdrngp ai  +q + +++++++
  GSBRNA2T00001316001 122 LREWWKDRVRFDRNGPGAILRHQRQINLSADGR 154
                          **********************98888877766 PP
2EIN326.21.3e-08150272239354
                          -SHHHHHHHHHHTTTTT-S--XXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3 239 sakesfallsvlnqeekecatvsahss..........slrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesa 318
                          sa  +  +l+ lnqe++ +++ + ++              +++++v ++++ +++ve    s  +hv +v +  +f+ v+ ++k ++e  
  GSBRNA2T00001316001 150 SADGRSLWLAALNQEKSNVDQTQYNPLafsgesnanaLGASGETDVLFQESGDYNVEAAYGSP-QHVPEVAN--NFNYVNNKRKFEGELG 236
                          6667789**********9999988833344565555433348899999999999999888888.88888776..8888877777788888 PP

                          XXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                 EIN3 319 kvsskevsrtcqssqfrgsetelifadknsisqney 354
                              +    tc++s +++s+++++f+d+  ++++++
  GSBRNA2T00001316001 237 LSFHQTRNLTCENSYCPYSQPHMGFNDRVLRDSHQM 272
                          77778889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.4E-4340153No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MFNNNTEMFS GLVSNPERDV GPASLTAVCD DLTNQDIEIE ELERKIWKDK QRLKQLKEMS  60
KNGSGKRLLK HPEDSTKRMM YQAQDGILKY MSKAMERCKA QGFVYGIVFE NGKTVTGSSD  120
NLREWWKDRV RFDRNGPGAI LRHQRQINLS ADGRSLWLAA LNQEKSNVDQ TQYNPLAFSG  180
ESNANALGAS GETDVLFQES GDYNVEAAYG SPQHVPEVAN NFNYVNNKRK FEGELGLSFH  240
QTRNLTCENS YCPYSQPHMG FNDRVLRDSH QMTCPYKTLS YYQPAKPLGM PLSFMTPYQV  300
EMQQQQQQEQ FNLSNTLYRP KAVERGGNND YLSDHRFGLV DNSSPSTSAM NHNPGLVLPV  360
NFNGNEETVG MENNQHNQEG GLPMPWIE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001316001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126501.11e-161PREDICTED: ETHYLENE INSENSITIVE 3-like 2 protein
RefseqXP_013721944.21e-161ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231151e-59EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A078F7T10.0A0A078F7T1_BRANA; BnaA02g05250D protein
TrEMBLM4DUF30.0M4DUF3_BRARP; Uncharacterized protein
STRINGBra020146.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2141635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.15e-61ETHYLENE-INSENSITIVE3-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]