PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001072001
Common NameGSBRNA2T00001072001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 213aa    MW: 24026.7 Da    PI: 9.342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001072001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-191970256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +++GVr+++ +g+++AeIrdps ng  +r +lg+f tae+Aa+a+++a+ +l+g+
  GSBRNA2T00001072001 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAYNLRGH 70
                         69*******.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-171878No hitNo description
SMARTSM003802.1E-351983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-311979IPR001471AP2/ERF domain
PROSITE profilePS5103224.4471977IPR001471AP2/ERF domain
PfamPF008471.5E-131970IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-231978IPR016177DNA-binding domain
PRINTSPR003671.2E-102031IPR001471AP2/ERF domain
PRINTSPR003671.2E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEGTNRRSNN QIQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY  60
DRAAYNLRGH LAILNFPNEY YSRMDDYSLR PPYSSSSSSS GSTSTGVSRK NQREVFEFEY  120
LDDKVLEELL DTEERNKRYR GCTGVESVVP LPPDAIDNGL RSKAFEGPRG RRVPDAHPIR  180
EGCPGVEVQT VVQSVDVPRF AHLLHIARRG GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-311612511114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001072001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-110AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAJ5803771e-110AJ580377.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding protein.
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594583.12e-95PREDICTED: ethylene-responsive transcription factor ERF098
RefseqXP_013746853.12e-95ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC57e-70ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A078F6F21e-154A0A078F6F2_BRANA; BnaC01g31050D protein
STRINGBo1g102220.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-59ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]