PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00000842001

Common Name

GSBRNA2T00000842001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 737aa MW: 82311.6 Da PI: 6.8405

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00000842001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.5e-18	94	148	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++++++q++e+e++F+ n++p+ +++++L+++lgLt qVk+WFqNrR + k GSBRNA2T00000842001 94 KRLHRHSTHQIQEMEAFFKVNPHPNDDDKTRLSEELGLTPLQVKFWFQNRRNQIK 148 4457899********************************************8876 PP
2	START	148.7	5.1e-47	250	475	2	206
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetl 76 la ++ qel k+ + +ep+W+k s+n+d++ + ++ ea+ra +vv+m++ +lv+ +ld +W+e++ GSBRNA2T00000842001 250 LAVSCVQELAKMCATNEPLWSKKGsendrISLNEDVYKK------MfqwpsvddnhFRREASRANTVVIMNSITLVNAFLDAD-KWSEMF 332 578899*************998566644444444444......233344577778**********************.**** PP S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEE CS START 77 a....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRaellpSg 151 +a+t++ i sg g l lm+aelq+lsplvp R+ +f+Ry +q +ag+w+ivd vd kp + + ++ R pSg GSBRNA2T00000842001 333 CsivsRAKTIQIIYSGvsgasGSLLLMYAELQVLSPLVPtREIYFLRYVKQnAEAGKWMIVDFPVDGLIKPASgittTDQYRR---KPSG 419 9999**********************************************************99999888775555555... PP EEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 152 iliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++i+++sng+s++twvehv+++++++ h ++r v+sg+a+ga +w+a l+rqce+ GSBRNA2T00000842001 420 FIIQDMSNGYSQITWVEHVEVEEKHVhHKMVREYVESGAAFGAERWLAVLRRQCER 475 **********************99************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-18	76	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-18	90	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	90	150	IPR001356	Homeobox domain
SMART	SM00389	1.3E-17	91	154	IPR001356	Homeobox domain
CDD	cd00086	3.66E-18	92	151	No hit	No description
Pfam	PF00046	4.3E-15	94	148	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	125	148	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.676	240	478	IPR002913	START domain
SuperFamily	SSF55961	3.98E-31	241	477	No hit	No description
CDD	cd08875	2.02E-101	244	474	No hit	No description
SMART	SM00234	7.6E-34	249	475	IPR002913	START domain
Pfam	PF01852	2.5E-39	250	475	IPR002913	START domain
SuperFamily	SSF55961	1.79E-7	527	688	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP NFKRSTFLNP NFSYVIPKEE 60 YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS THQIQEMEAF FKVNPHPNDD 120 DKTRLSEELG LTPLQVKFWF QNRRNQIKTQ QDRTDNVMLK AENETLKTEN RKLQFDLQRL 180 SCSSCGGSRE KLHLENSRLR QELDRLHSIA SLMNPCLPPP QTARLFPDMN DNITNNLLIT 240 EEDKAIAMDL AVSCVQELAK MCATNEPLWS KKGSENDRIS LNEDVYKKMF QWPSVDDNHF 300 RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIIYSGVS GASGSLLLMY 360 AELQVLSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL IKPASGITTT DQYRRKPSGF 420 IIQDMSNGYS QITWVEHVEV EEKHVHHKMV REYVESGAAF GAERWLAVLR RQCERMASLM 480 ATNITDLGVI PSVEAKRKLM KLSQSMVRTY CLTISNSYGQ ALSESPKETV IITTRKVCGG 540 VVLCGVSTTL LPYSHHQVFD LLRHDHGRSQ MEMLFSENPF QEVAHIANGS HPGNCISLLH 600 FHVSGASSSN NVEWMLQETC TDNSGSLVVY STVHANAVQL AMNGEDPSRI SLLPLGFSVV 660 PVNQPHVVEG ISVNLDSCLL TVAIQVLVSN ATTAALNLST TAINNRICST VYRISSALGS 720 PLLPEIPSSF KQEISN*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP NFKRSTFLNP NFSYVIPKEE  60
YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS THQIQEMEAF FKVNPHPNDD  120
DKTRLSEELG LTPLQVKFWF QNRRNQIKTQ QDRTDNVMLK AENETLKTEN RKLQFDLQRL  180
SCSSCGGSRE KLHLENSRLR QELDRLHSIA SLMNPCLPPP QTARLFPDMN DNITNNLLIT  240
EEDKAIAMDL AVSCVQELAK MCATNEPLWS KKGSENDRIS LNEDVYKKMF QWPSVDDNHF  300
RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIIYSGVS GASGSLLLMY  360
AELQVLSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL IKPASGITTT DQYRRKPSGF  420
IIQDMSNGYS QITWVEHVEV EEKHVHHKMV REYVESGAAF GAERWLAVLR RQCERMASLM  480
ATNITDLGVI PSVEAKRKLM KLSQSMVRTY CLTISNSYGQ ALSESPKETV IITTRKVCGG  540
VVLCGVSTTL LPYSHHQVFD LLRHDHGRSQ MEMLFSENPF QEVAHIANGS HPGNCISLLH  600
FHVSGASSSN NVEWMLQETC TDNSGSLVVY STVHANAVQL AMNGEDPSRI SLLPLGFSVV  660
PVNQPHVVEG ISVNLDSCLL TVAIQVLVSN ATTAALNLST TAINNRICST VYRISSALGS  720
PLLPEIPSSF KQEISN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269\|PubMed:16778018}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00000842001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602839.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG4
Refseq	XP_013741032.1	0.0	homeobox-leucine zipper protein HDG4-like
Swissprot	Q8L7H4	0.0	HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBL	A0A078F641	0.0	A0A078F641_BRANA; BnaC08g10960D protein
STRING	Bo8g049710.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17710.1	0.0	homeodomain GLABROUS 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]