PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000786001
Common NameGSBRNA2T00000786001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 22938.5 Da    PI: 9.6032
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000786001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.5e-22956148
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         krienks rqvtf+kRrng++ KA  LSvLC+  vav+i+sstgk+y 
  GSBRNA2T00000786001  9 KRIENKSSRQVTFCKRRNGLIEKARQLSVLCGSSVAVLIVSSTGKVYS 56
                         79********************************************96 PP
2K-box26.72.4e-108216716100
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee.lqkkekelqeenkaLrkklee 100
                           l+++ ++  + +e L++ qR++   +++++s++ L  Le+q ++ l+  R++K+el+++ +++ lq+kek l++en+ L ++l+e
  GSBRNA2T00000786001  82 DLTEKTQNYLSLNELLETVQRKIEAANVDNISVQSLIFLEEQFKTDLSLTRARKTELMMQLVKKsLQEKEKLLRDENTVLASQLAE 167
                          4555556666678899999999**************************************986538***************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.978161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-26173IPR002100Transcription factor, MADS-box
CDDcd002655.12E-31271No hitNo description
PRINTSPR004041.2E-22323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.1E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-223859IPR002100Transcription factor, MADS-box
PfamPF000125.0E-656159IPR013126Heat shock protein 70 family
PROSITE profilePS5129710.44480171IPR002487Transcription factor, K-box
PfamPF014865.4E-794165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRRKVEIKR IENKSSRQVT FCKRRNGLIE KARQLSVLCG SSVAVLIVSS TGKVYSSSSG  60
DSMAKILKHY EVQHADKLKT LDLTEKTQNY LSLNELLETV QRKIEAANVD NISVQSLIFL  120
EEQFKTDLSL TRARKTELMM QLVKKSLQEK EKLLRDENTV LASQLAEMGK EKEFLETEDE  180
RAMLLEYSSG NNPRETLPLL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15170169MEF2C
5f28_B4e-15170169MEF2C
5f28_C4e-15170169MEF2C
5f28_D4e-15170169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in most plant tissues, roots, seedlings, leaves, stems, inflorescences, pollen, siliques and flowers. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000786001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150583.11e-139PREDICTED: protein MADS AFFECTING FLOWERING 5-like isoform X2
RefseqXP_013643101.11e-139protein MADS AFFECTING FLOWERING 5-like isoform X4
SwissprotQ9FPN71e-86AGL31_ARATH; Agamous-like MADS-box protein AGL31
TrEMBLA0A078F7061e-142A0A078F706_BRANA; BnaA06g24000D protein
STRINGBra024351.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM9861987
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.17e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]