PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000766001
Common NameGSBRNA2T00000766001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 309aa    MW: 35013.4 Da    PI: 6.1385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000766001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd++l+ +++++G  +W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00000766001 16 KGPWLPEEDDKLISYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 63
                         79********************************************97 PP

2Myb_DNA-binding55.41.4e-1769114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  GSBRNA2T00000766001  69 RGKFSQEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 114
                          89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9121163IPR017930Myb domain
SuperFamilySSF466892.13E-2914110IPR009057Homeodomain-like
SMARTSM007178.4E-141565IPR001005SANT/Myb domain
PfamPF002494.1E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241770IPR009057Homeodomain-like
CDDcd001671.18E-101863No hitNo description
PROSITE profilePS5129427.24764118IPR017930Myb domain
SMARTSM007171.7E-1668116IPR001005SANT/Myb domain
PfamPF002491.8E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2871119IPR009057Homeodomain-like
CDDcd001672.97E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRSPLSADE TGTLKKGPWL PEEDDKLISY IHKHGHSSWS ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSQEEEETI LNLHAVLGNK WSMIASHLPG RTDNEIKNFW NTHLKKKLIQ  120
MGFDPMTHRP RTDDIFSSLS QLMSLSNLRG LVDLQQHVTY EDQHALLNLQ GEMAKLQLLN  180
YLLQPPPLAM SSSNNINPNE LNILNLLTKE NYNTNNLDLT SCLQDFNNNL PSLKTLEENH  240
FSQNNSPIWS HEPPSLNQTM LPSHDPSPLG DDLVLNQASS SHEQEVAATC SVDWPDHLFD  300
DSMFPYQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141185108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and flowers. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000766001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013645763.10.0transcription factor MYB39
SwissprotQ9FJP21e-156MYB53_ARATH; Transcription factor MYB53
TrEMBLA0A078FAG20.0A0A078FAG2_BRANA; BnaA06g24160D protein
TrEMBLA0A397Z7J70.0A0A397Z7J7_BRACM; Uncharacterized protein
STRINGBra024368.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-149myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]