PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00000710001 | ||||||||
Common Name | GSBRNA2T00000710001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 197aa MW: 21849.6 Da PI: 10.0485 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 2.9e-39 | 33 | 92 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvP+Ggg+rk kks GSBRNA2T00000710001 33 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPIGGGCRKTKKS 92 57899***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.5E-33 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.497 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 39 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSSHTNLHSP KPDHRTTGTP HTKKPPSSST SQDQQTLKCP RCNSSNTKFC YYNNYSLSQP 60 RHFCKACRRY WTRGGALRNV PIGGGCRKTK KSFKPNAVAT PSSSQRFFSS IMEDSSKFFP 120 PPTTMDFQLA GLSLNKINDL QLMNNQEVLG LRPMDQVETT PVDVGSGLSL MGFGDYSNNN 180 TIQRGRLQPP EQPTET* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00000710001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189266 | 1e-148 | AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013728157.1 | 1e-132 | dof zinc finger protein DOF5.7-like | ||||
Swissprot | Q9LSL6 | 5e-98 | DOF57_ARATH; Dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A078F2N6 | 1e-144 | A0A078F2N6_BRANA; BnaA06g24490D protein | ||||
STRING | Bra024399.1-P | 1e-130 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 5e-85 | Dof family protein |
Publications ? help Back to Top | |||
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